Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060968.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1289 - 36010924-36011001,36011441-36011518,36012321-360124... 38 0.007
05_05_0110 + 22470869-22470920,22471044-22471146,22473261-224733... 37 0.013
03_01_0432 + 3339235-3339915,3340313-3340561,3341071-3341139,334... 31 0.85
05_03_0227 + 10655204-10655269,10656333-10656393,10656570-106566... 29 4.5
03_02_0755 + 10932897-10933010,10933446-10933577,10933666-109337... 28 6.0
01_07_0028 - 40588611-40588718,40588812-40588901,40589966-405901... 28 6.0
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 28 7.9
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689... 28 7.9
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 28 7.9
03_06_0260 - 32717142-32717270,32717743-32717831,32717950-327180... 28 7.9
03_01_0296 + 2284385-2285629,2287632-2288594 28 7.9
>01_06_1289 -
36010924-36011001,36011441-36011518,36012321-36012421,
36012506-36012603,36016213-36016315,36016435-36016486
Length = 169
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +1
Query: 370 MSNTVPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSR 549
M+ T+ +S L L + K L + PV+GF L+ + N+FEW+V I
Sbjct: 1 MAATISQASLL--LQKQLKDLAKHPVDGFSAGLVDDSNVFEWQVTIIGPPDTLYDGGYFN 58
Query: 550 AHMXFPPGLP 579
A M FP P
Sbjct: 59 AIMSFPQNYP 68
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 596 IRFLTKVWHPNVYENG 643
+RF +++WHPNVY +G
Sbjct: 74 VRFTSEMWHPNVYPDG 89
>05_05_0110 +
22470869-22470920,22471044-22471146,22473261-22473358,
22473430-22473530,22474052-22474129,22474578-22474655
Length = 169
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +1
Query: 391 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSRAHMXFPP 570
S A L + K L + PV+GF L+ + N+FEW+V I A M FP
Sbjct: 6 SQASLLLQKQLKDLAKNPVDGFSAGLVDDSNVFEWQVTIIGPPDTLYDGGYFNAIMTFPQ 65
Query: 571 GLP 579
P
Sbjct: 66 NYP 68
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 596 IRFLTKVWHPNVYENG 643
+RF +++WHPNVY +G
Sbjct: 74 VRFTSEMWHPNVYPDG 89
>03_01_0432 +
3339235-3339915,3340313-3340561,3341071-3341139,
3341292-3341414,3341526-3341738
Length = 444
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +1
Query: 493 WEVAISDR-RIHFIKVDTSRAHMXFPPGLPVFTTIH*VFN*SLASKCI*KRRPLAYRFST 669
W DR R+H KV H+ FPP P + T H + PL R T
Sbjct: 62 WTNRTYDRLRLHLPKVFCELPHVAFPPDFPTYPTKHDFLRYLHSYAARFAIAPLLRRTVT 121
Query: 670 RPWDD 684
R W D
Sbjct: 122 RAWYD 126
>05_03_0227 +
10655204-10655269,10656333-10656393,10656570-10656672,
10656768-10656870,10656951-10657004,10657124-10657186,
10657884-10658105,10658249-10658336,10658561-10658646,
10659003-10659110,10659201-10659245,10659511-10659601,
10659662-10659765
Length = 397
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = -2
Query: 270 HFNSLHNNELEILVNIASILQH 205
+ ++LH EL++L+NIASIL++
Sbjct: 294 YMHNLHGLELKVLINIASILKN 315
>03_02_0755 +
10932897-10933010,10933446-10933577,10933666-10933750,
10934668-10934831,10934911-10935357
Length = 313
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 397 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAI 507
A++ + E K +Q P F L ED +FEW+ AI
Sbjct: 13 AVKRILQEVKEMQSNPSPDFMAMPLEED-IFEWQFAI 48
>01_07_0028 -
40588611-40588718,40588812-40588901,40589966-40590125,
40590547-40590595,40591158-40591338
Length = 195
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/17 (58%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
Frame = +2
Query: 596 IRFLTKVWHPNV-YENG 643
++F+TKVWHPN+ +NG
Sbjct: 70 MQFITKVWHPNISSQNG 86
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 51 SSDYVSLNGASLSHCCLTDRVLWVCCFVYFS 143
SS V LNG L+H +T R L++ C ++S
Sbjct: 2626 SSSAVELNGVLLNHALVTFRELFLKCAQHYS 2656
>09_02_0285 +
6894899-6895114,6896197-6896422,6896889-6896992,
6897121-6897239,6897445-6897634
Length = 284
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 596 IRFLTKVWHPNVYENGDL 649
+ F TKV+HPN+ NG +
Sbjct: 67 VNFQTKVYHPNINSNGSI 84
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 27.9 bits (59), Expect = 7.9
Identities = 7/18 (38%), Positives = 16/18 (88%)
Frame = +2
Query: 596 IRFLTKVWHPNVYENGDL 649
+RF+++++HPN+Y +G +
Sbjct: 94 VRFVSRMFHPNIYADGSI 111
>03_06_0260 -
32717142-32717270,32717743-32717831,32717950-32718039,
32721571-32721596,32721772-32721896
Length = 152
Score = 27.9 bits (59), Expect = 7.9
Identities = 7/18 (38%), Positives = 16/18 (88%)
Frame = +2
Query: 596 IRFLTKVWHPNVYENGDL 649
+RF+++++HPN+Y +G +
Sbjct: 70 VRFVSRMFHPNIYADGSI 87
>03_01_0296 + 2284385-2285629,2287632-2288594
Length = 735
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 93 CCLTDRVLWVCC 128
CCL DR+LW+ C
Sbjct: 430 CCLLDRILWLVC 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,317,188
Number of Sequences: 37544
Number of extensions: 406158
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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