Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060968.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      59   3e-09
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.017
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)               31   1.1  
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     28   6.1  
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)                 28   8.1  
SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)               28   8.1  
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 32/63 (50%), Positives = 37/63 (58%)
 Frame = +1

Query: 391  SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSRAHMXFPP 570
            SSA+RAL LE K L EEPVEGF V++  E N FEW+VAI             +AHM FP 
Sbjct: 1123 SSAVRALQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPH 1182

Query: 571  GLP 579
              P
Sbjct: 1183 DYP 1185



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +2

Query: 599  RFLTKVWHPNVYENGDL 649
            RFLTK+WHPN+YE+GD+
Sbjct: 1192 RFLTKMWHPNIYESGDV 1208



 Score = 35.1 bits (77), Expect = 0.053
 Identities = 23/56 (41%), Positives = 25/56 (44%)
 Frame = +3

Query: 510  GPPDTLYQGGYFKGTHXIPPWTTRIHHHPLGF*LKSGIQMYMKTETFGISILHPPV 677
            GPP TLY GGYFK  H   P           F  K       ++    ISILHPPV
Sbjct: 1163 GPPGTLYAGGYFKA-HMSFPHDYPYSPPTFRFLTKMWHPNIYESGDVCISILHPPV 1217


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 430 LQEEPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSRAHMXFPPGLP 579
           LQ++PVEGF   L  +++L++WE+ +      + +    +A M FP   P
Sbjct: 344 LQKKPVEGFSAGLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYP 393



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +2

Query: 596 IRFLTKVWHPNVYENGDL 649
           + F++ +WHPNV++NG++
Sbjct: 399 LTFISDIWHPNVHKNGEV 416


>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
          Length = 823

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/92 (28%), Positives = 48/92 (52%)
 Frame = -3

Query: 506 IATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAELVGTVLDIVSYVFIQPSLPS*T 327
           + TS ++  + P N+T   ++ +S R+L+SN     A   G + + V + + + +LP   
Sbjct: 207 VNTSQTSPSAPPVNITAFNTSATSIRVLWSNVP--EAHRNGIIQNFV-FSYGETALP--W 261

Query: 326 KLYKHITLELFTLSTYPPGISTRYITTN*KFW 231
             + +ITL L +L+T   G  T+ + T  K W
Sbjct: 262 SNHSNITLTLDSLATTAEGYFTKDL-TGLKIW 292


>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +2

Query: 602 FLTKVWHPNVYENGDL 649
           FLTK++HPNV +NG++
Sbjct: 147 FLTKIFHPNVAKNGEI 162


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 403  RALALEYKSLQE-EPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSRAHMXFPPGLP 579
            RA+ L  ++ ++  PV   RVK +GED + +  +A    R  F  +    A   FP G P
Sbjct: 1370 RAITLWQRAAKKVNPVHVCRVKFVGEDGIDDGALA----REFFSCIIPDIAKKFFPDGSP 1425

Query: 580  VFTT 591
            +++T
Sbjct: 1426 IYST 1429


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 388 TSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSRAHMXFP 567
           +S  LRA  LE +S+   P+ G+R   +      +W   +  R   FI+   +R     P
Sbjct: 725 SSKILRACFLEEESIGSVPLRGYRGHDVQSLKALQWLKYLEHREGVFIQHAGNRREKCLP 784

Query: 568 PGLPV 582
            G+ V
Sbjct: 785 GGIKV 789


>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 510 GPPDTLYQGGYFKGTHXIPP 569
           GPPDT + GG + G   +PP
Sbjct: 47  GPPDTEFAGGRYHGRIILPP 66


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 329 TKLYKHITLELFTLSTYPPGISTRYITTN 243
           T + +H+  EL TL TY P  S   +T N
Sbjct: 252 TNVIQHVPFELLTLDTYAPDNSWYILTMN 280


>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
          Length = 123

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 510 GPPDTLYQGGYFKGTHXIPP 569
           GPPDT + GG + G   +PP
Sbjct: 12  GPPDTEFAGGRYHGRIILPP 31


>SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)
          Length = 76

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 496 PTQIDCPLLAI*HGNLLQVLLADSCTPTLKP 404
           P  +D   LAI H  L    + D C PT +P
Sbjct: 3   PCDLDAAALAIRHALLTAATMCDRCWPTWRP 33


>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 403  RALALEYKSLQE-EPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSRAHMXFPPGLP 579
            RA+ L  ++ ++  PV   RVK +GED + +  +A    R  F  +    A   FP G P
Sbjct: 959  RAITLWQRAAKKVNPVHVCRVKFVGEDGIDDGALA----REFFSCIIPDIAKKFFPDGSP 1014

Query: 580  VFTT 591
             ++T
Sbjct: 1015 AYST 1018


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,419,729
Number of Sequences: 59808
Number of extensions: 479629
Number of successful extensions: 1145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)