Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060968.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    50   1e-06
AL110500-10|CAB60431.1|  170|Caenorhabditis elegans Hypothetical...    40   0.001
AC024748-1|AAF60411.2|  218|Caenorhabditis elegans Ubiquitin con...    37   0.012
Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical p...    34   0.11 
Z81108-2|CAB03238.1|  180|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical ...    30   1.3  
U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.        29   4.1  
AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin con...    29   4.1  
Z95309-2|CAB08560.1|   72|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF099919-11|AAC68796.1|  199|Caenorhabditis elegans Ubiquitin co...    27   9.4  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/69 (40%), Positives = 37/69 (53%)
 Frame = +1

Query: 373 SNTVPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSRA 552
           S    +S ALRAL +E K+LQ +PVEGF +  + EDNLF W V I        +    +A
Sbjct: 3   SKASTSSGALRALTMELKNLQSQPVEGFTID-VNEDNLFVWTVGIYGPPKTLYQGGYFKA 61

Query: 553 HMXFPPGLP 579
            + FP   P
Sbjct: 62  SIRFPSNYP 70



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +2

Query: 596 IRFLTKVWHPNVYENGDL 649
           ++F TKVWHPNVYENGDL
Sbjct: 76  MKFTTKVWHPNVYENGDL 93


>AL110500-10|CAB60431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y87G2A.9 protein.
          Length = 170

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +1

Query: 397 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAISDRRIHFIKVDTSRAHMXFPPGL 576
           AL+ L  EYK L   P EG     + EDN FEWE  I+             A + FP   
Sbjct: 5   ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64

Query: 577 PV 582
           P+
Sbjct: 65  PL 66


>AC024748-1|AAF60411.2|  218|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein15 protein.
          Length = 218

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 388 TSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAI 507
           +SSA+R L  +Y  L ++PV+G +  L  EDN+ EW   +
Sbjct: 17  SSSAVRRLQKDYAKLMQDPVDGIKA-LPNEDNILEWHYCL 55


>Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical
           protein F58A4.10 protein.
          Length = 164

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 507 LGPPDTLYQGGYFKGTHXIP 566
           +GPPDTLY+GG+FK     P
Sbjct: 41  IGPPDTLYEGGFFKAILDFP 60



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +1

Query: 409 LALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAI 507
           L  +   ++  PV+GF   L+ ++++++WEV +
Sbjct: 8   LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLV 40


>Z81108-2|CAB03238.1|  180|Caenorhabditis elegans Hypothetical
           protein R09B3.4 protein.
          Length = 180

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 596 IRFLTKVWHPNVYENGDL 649
           ++ LTKVWHPN+ E+G +
Sbjct: 94  VKCLTKVWHPNINEDGSI 111


>AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical
           protein F49D11.10 protein.
          Length = 766

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 506 IATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAELV 387
           +   +SN + SP+N     +TG+SC +L+S+ K   A  V
Sbjct: 12  VGQPYSNLVISPNNRILATTTGASCEVLFSDKKGNDARRV 51


>U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.
          Length = 192

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +2

Query: 596 IRFLTKVWHPNVYENGDL 649
           ++F++K++HPNVY +G +
Sbjct: 70  VKFISKMFHPNVYADGSI 87


>AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein1 protein.
          Length = 192

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +2

Query: 596 IRFLTKVWHPNVYENGDL 649
           ++F++K++HPNVY +G +
Sbjct: 70  VKFISKMFHPNVYADGSI 87


>Z95309-2|CAB08560.1|   72|Caenorhabditis elegans Hypothetical
           protein H36L18.2 protein.
          Length = 72

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 279 STRHFNSLHNNELEILVNIASILQHPQVRVTHFKRQP 169
           S R F+ +H+N L     + +I  H Q+R+ H K +P
Sbjct: 31  SIRVFSIIHSNFLNDNRKVNNIFSHRQIRLCHAKVRP 67


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 458 RKPSTGSSCRLLYSNAKALRAELVGTV 378
           R PSTG+ CR    N + LR E + T+
Sbjct: 74  RSPSTGAICRGTVENMRQLRLERMKTI 100


>AF099919-11|AAC68796.1|  199|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein20 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 596 IRFLTKVWHPNV 631
           ++F TK+WHPNV
Sbjct: 73  VKFSTKIWHPNV 84


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 494 HSNRLSSPSNLTRKPSTGSSCRLLYSNAKALRAELVGTVLDIVSYVFI 351
           HS + S  S   RK STGS C    S  +      +   +  VSY+F+
Sbjct: 124 HSKQNSGASTPARKNSTGSECPC--SKQEQCHKHSINITVGAVSYLFL 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,454,988
Number of Sequences: 27780
Number of extensions: 352309
Number of successful extensions: 850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)