Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060966.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    60   2e-11

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 59.7 bits (138), Expect = 2e-11
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +1

Query: 247 KQPPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 423
           K PP        P+ ++++PTRELA QI      F + S V+   ++GG     Q   + 
Sbjct: 224 KNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRIL 283

Query: 424 RGVEIVIATPGRLIDFLEKGTTN 492
            G  I++ATPGRL DF+ +G  +
Sbjct: 284 GGCHILVATPGRLKDFVNRGNVS 306



 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
 Frame = +3

Query: 468 FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKII-EQIRP---DRQTLMWSA 617
           F+ +G+    ++   VLDEADRMLDMGF   + +++  Q  P   +RQTLM+SA
Sbjct: 299 FVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSA 352



 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +3

Query: 21  EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLM 199



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 194 QTGSGKTLAYILPAIVH 244
           QTGSGKT A++LP I+H
Sbjct: 203 QTGSGKTAAFMLP-IIH 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,347
Number of Sequences: 336
Number of extensions: 4102
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)