Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060966.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 114 1e-26
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 91 1e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 73 4e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 73 4e-14
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 60 4e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 4e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 56 5e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 56 6e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 6e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 2e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 53 4e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 50 4e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 49 7e-07
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 49 7e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 47 3e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 5e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 3e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 6e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 41 2e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 39 6e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 36 0.005
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 33 0.029
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.63
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.83
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 2.5
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 2.5
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 25 7.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 114 bits (274), Expect = 1e-26
Identities = 54/85 (63%), Positives = 63/85 (74%)
Frame = +1
Query: 256 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 435
P + GDGPI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVE
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVE 247
Query: 436 IVIATPGRLIDFLEKGTTNLQRCTF 510
I IATPGRL+D L+ TNL+R T+
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTY 272
Score = 74.9 bits (176), Expect = 1e-14
Identities = 30/57 (52%), Positives = 43/57 (75%)
Frame = +3
Query: 21 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
E+ V G+ V P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG+
Sbjct: 109 EIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGI 165
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/49 (71%), Positives = 39/49 (79%)
Frame = +3
Query: 471 LGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
L L V LVLDEADRMLDMGFEPQIRKI++QIRPDRQT+M+SA
Sbjct: 260 LDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSA 308
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2
Query: 197 TGSGKTLAYILPAIVHIN 250
TGSGKTL+Y LPAIVHIN
Sbjct: 168 TGSGKTLSYCLPAIVHIN 185
Score = 33.1 bits (72), Expect = 0.038
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 626 PKEVXKLAXDYLGDYIQIHI 685
PKEV +LA DYL DYIQ+ +
Sbjct: 311 PKEVQRLARDYLNDYIQVTV 330
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 91.1 bits (216), Expect = 1e-19
Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Frame = +1
Query: 247 KQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 426
K P++ G+GPIA+++ PTRELA QI + F +R C +GGAP ++Q DL+R
Sbjct: 481 KDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKR 540
Query: 427 GVEIVIATPGRLIDFLEKG---TTNLQRCTF 510
G EIV+ TPGR+ID L TNL RCT+
Sbjct: 541 GAEIVVCTPGRMIDVLSANAGRVTNLHRCTY 571
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
LVLDEADRM D+GFEPQ+ +II IRPDRQT+++SA
Sbjct: 572 LVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSA 607
Score = 41.9 bits (94), Expect = 8e-05
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
+ + G++ P+ + + + ++GY++PT IQAQ P SG++++GV K
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAK 463
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHR 259
+TGSGKT+A++LP HI + R
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQR 484
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 72.9 bits (171), Expect = 4e-14
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 426
PP+ + GP A+VLAPTRELAQQIQ F R V GG EQ+ + +
Sbjct: 315 PPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQ 374
Query: 427 GVEIVIATPGRLIDFLEKGTTNLQRCTF 510
G IV+ATPGRL+D LE+ L +CT+
Sbjct: 375 GAHIVVATPGRLLDCLERRLFVLSQCTY 402
Score = 48.4 bits (110), Expect = 1e-06
Identities = 18/59 (30%), Positives = 38/59 (64%)
Frame = +3
Query: 15 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G+
Sbjct: 234 DYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGI 292
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKIIEQI 584
+V+DEADRMLDMGFE + KI+ +
Sbjct: 403 VVMDEADRMLDMGFEDDVNKILSSL 427
Score = 28.7 bits (61), Expect = 0.83
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHIN 250
+TGSGKT A+I+P I+ I+
Sbjct: 294 ETGSGKTAAFIIPLIIAIS 312
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 72.9 bits (171), Expect = 4e-14
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = +1
Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 459
P L+LAPTREL QI + + F + S+VR V+GGA R Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 460 LIDFLEKGTTNLQRCTF 510
L+D +++G +L F
Sbjct: 316 LVDLIDRGRISLANIKF 332
Score = 56.0 bits (129), Expect = 5e-09
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Frame = +3
Query: 471 LGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIR----PDRQTLMWSA 617
+ +G L + LVLDEADRMLDMGFEPQIR I+E +RQTLM+SA
Sbjct: 320 IDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSA 372
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 59.7 bits (138), Expect = 4e-10
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
AL+LAPTRELAQQIQ+V G V GG R+ L+ GV +V+ TPGR+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVH 149
Query: 466 DFLEK 480
D +++
Sbjct: 150 DMIQR 154
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +3
Query: 498 AVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQ 629
AV + VLDEAD ML GF+ QI I + + P Q ++ SA + Q
Sbjct: 161 AVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQ 204
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.4 bits (130), Expect = 4e-09
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = +1
Query: 268 RGDGPIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEI 438
R G A+++APTREL QQI VA + + ++ + V GG K+ + + +GV I
Sbjct: 213 RTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNI 272
Query: 439 VIATPGRLIDFLE 477
+I TPGRL D LE
Sbjct: 273 LIGTPGRLADHLE 285
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQKKXRNLLXITWEIT 671
++ V +VLDE DR++DMGFE + KI+ + + + +K L T + T
Sbjct: 292 VSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDT 351
Query: 672 FRSI 683
+ +
Sbjct: 352 VKRL 355
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 194 QTGSGKTLAYILPAI 238
QTGSGKTLAY+LP +
Sbjct: 186 QTGSGKTLAYLLPIV 200
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 56.0 bits (129), Expect = 5e-09
Identities = 29/73 (39%), Positives = 36/73 (49%)
Frame = +1
Query: 289 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 468
L+L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 469 FLEKGTTNLQRCT 507
KG + CT
Sbjct: 176 LAGKGVADFSECT 188
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 212
FE+ + G+ G++ P+PIQ + PIA+SG++++ K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 33.5 bits (73), Expect = 0.029
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 474 GKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
GKG + V+DEAD++L F P I +++ +RQ ++SA
Sbjct: 178 GKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSA 225
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/48 (18%), Positives = 24/48 (50%)
Frame = +2
Query: 116 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNHR 259
G +R + + ++ R + G+GKT A+++P++ ++ +
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKK 110
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 6e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 265 RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 444
R G G I +++PTRELA QI VA + + V GGA +R +A L +GV +++
Sbjct: 159 RNGTGVI--IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLV 216
Query: 445 ATPGRLIDFLE 477
ATPGRL+D L+
Sbjct: 217 ATPGRLLDHLQ 227
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/37 (51%), Positives = 32/37 (86%), Gaps = 1/37 (2%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSA 617
LV+DEADR+L++GFE ++R+I++ + +RQTL++SA
Sbjct: 240 LVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSA 276
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 194 QTGSGKTLAYILPAI 238
+TGSGKTLA+++P I
Sbjct: 134 KTGSGKTLAFLIPTI 148
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 6e-09
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +1
Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 459
P LV++PTRELA Q + + ++ V+GGAPK EQAR + ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGR 295
Query: 460 LIDFLEKGT 486
L+D + G+
Sbjct: 296 LLDLINDGS 304
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +3
Query: 54 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGI 208
Score = 41.5 bits (93), Expect = 1e-04
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +3
Query: 471 LGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPD------RQTLMWSA 617
+ G + V LVLDEADRMLD GFE IR II PD RQT+ +SA
Sbjct: 300 INDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFSA 353
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHIN 250
+TGSGKT+A+ +PA+ ++N
Sbjct: 210 ETGSGKTVAFGIPALQYLN 228
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/66 (40%), Positives = 38/66 (57%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
G AL+L PTRELA QI + A G +++ + GG Q+ DL + +V+ATPG
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
Query: 457 RLIDFL 474
RL D +
Sbjct: 135 RLADLI 140
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIEQI--RPDRQTLMWSA 617
L + LV+DEADR+L F + + DRQTL+++A
Sbjct: 151 LRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTA 194
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 52.8 bits (121), Expect = 4e-08
Identities = 28/64 (43%), Positives = 38/64 (59%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
A+VLAPTRELA QI + G + VR+ + GG QA L + +++ TPGRL+
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 466 DFLE 477
D LE
Sbjct: 177 DHLE 180
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
L++DEADR+LDM F P I KI++ I +R+TL++SA + K
Sbjct: 193 LIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSK 233
Score = 34.7 bits (76), Expect = 0.013
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGL 89
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNH 256
QTGSGKT A+ LP I + N+
Sbjct: 91 QTGSGKTAAFALPVIQELWNN 111
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
AL+L+P RELA Q +V DF + +R+ + GG EQ L +IV+ATPGR +
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL 201
Score = 45.6 bits (103), Expect = 7e-06
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +3
Query: 489 QLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYL 623
+L+++ +V DEADR+ +MGF Q+ +I+ + RQTL++SA L
Sbjct: 210 ELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATL 254
Score = 31.9 bits (69), Expect = 0.089
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
F+ + + + G+K PTPIQ + P+ + G+++VG+ +
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMAR 114
Score = 29.1 bits (62), Expect = 0.63
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINN 253
+TGSGKT A+++P I H+ +
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS 133
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 48.8 bits (111), Expect = 7e-07
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +1
Query: 289 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 468
L+L PTRELA Q VA + + GG + Q ++L + +IVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 469 FL 474
+
Sbjct: 394 HM 395
Score = 45.2 bits (102), Expect = 9e-06
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
+ I+V+DEADRML+ GF ++ +II+ RQT+++SA + K
Sbjct: 406 IEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDK 449
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 188
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 48.8 bits (111), Expect = 7e-07
Identities = 25/65 (38%), Positives = 34/65 (52%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
AL+L+PTRELA QIQ V G V+ GG + L+ G +V TPGR+
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVT 151
Query: 466 DFLEK 480
D + +
Sbjct: 152 DMIRR 156
Score = 43.2 bits (97), Expect = 4e-05
Identities = 45/205 (21%), Positives = 82/205 (40%)
Frame = +3
Query: 15 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVL 194
N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++++
Sbjct: 8 NVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 195 KRVPAKRWPTSCQPLCT*TTTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTHILCS*H 374
+ K S L + + + L + ++ H+ H
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRD----TQALILSPTRELAVQIQNVVLALGDHMNVQCH 121
Query: 375 VCVWWCS*KRASPGLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHILVLDEADRMLDMGFE 554
C+ S L G + + + + + V +L+LDEAD +L+ GF+
Sbjct: 122 ACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFK 181
Query: 555 PQIRKIIEQIRPDRQTLMWSAYLAQ 629
QI I + P Q ++ SA L Q
Sbjct: 182 EQIYDIYRYLPPGTQVVVVSATLPQ 206
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRL 462
+++L+PTRELA QI + A + + +R + GG K + + RG ++IATPGRL
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Query: 463 IDFLE 477
D L+
Sbjct: 175 EDHLQ 179
Score = 32.7 bits (71), Expect = 0.051
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 513 VLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLMWSAYLAQK 632
+LDEADR++DMGF I I E + + + L +SA + K
Sbjct: 193 ILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPK 233
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 462
ALV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
Score = 29.5 bits (63), Expect = 0.47
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIE----QIRPDRQTLMWSA 617
+ LVLDEADR+L ++ K++E + RQT ++SA
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSA 311
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 188 RTQTGSGKTLAYILPAIVH 244
+ TGSGKTLA+ +P + H
Sbjct: 165 KADTGSGKTLAFGIPILEH 183
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 274 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 453
DG ALV++PTRELA Q + G + GG +E+ L R + I++ TP
Sbjct: 110 DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTP 168
Query: 454 GRLIDFLEK 480
GRL+ +++
Sbjct: 169 GRLLQHIDQ 177
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +3
Query: 495 TAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+ + +L+LDEADR+LDMGF + I+ + RQT+++SA
Sbjct: 184 SGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSA 224
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHI 247
+TGSGKTLA+I+P I ++
Sbjct: 84 KTGSGKTLAFIVPLIENL 101
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+ IL+LDEAD ++DMGF+ ++ II Q+ R+T ++SA
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSA 193
Score = 34.3 bits (75), Expect = 0.017
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
Score = 33.5 bits (73), Expect = 0.029
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GAPKREQARDLERGVE 435
AL++APTRELA QI V + G V + + G G + A E+
Sbjct: 75 ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS 134
Query: 436 IVIATPGRLIDFL 474
+VI TPGRL + L
Sbjct: 135 VVIGTPGRLNEML 147
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 197 TGSGKTLAYILP 232
TGSGKTLAY+LP
Sbjct: 47 TGSGKTLAYLLP 58
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +1
Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 459
P A+ LAP+RELA+QI V + G Y FG K + + +IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMG--KYTEVKTAFG--IKDSVPKGAKIDAQIVIGTPGT 240
Query: 460 LIDFLEK 480
++D +++
Sbjct: 241 VMDLMKR 247
Score = 28.7 bits (61), Expect = 0.83
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 501 VHILVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
+ + VLDEAD MLD G Q +I + + Q +++SA +++
Sbjct: 255 IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 299
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 6e-04
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +1
Query: 274 DGPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEI 438
DG ++ LVL TRELA QI+ A F + VR +GG + E +D + I
Sbjct: 117 DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHI 176
Query: 439 VIATPGRL 462
V+ATPGRL
Sbjct: 177 VVATPGRL 184
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.9 bits (79), Expect = 0.005
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGH--TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 450
G AL+L PTRELAQQ+ V + ++R V + Q L +IVIAT
Sbjct: 88 GIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIAT 147
Query: 451 PGRLIDFLEKGTTNLQRCTF 510
P R + + G L + F
Sbjct: 148 PSRCVVHVASGVLPLDKLKF 167
Score = 33.5 bits (73), Expect = 0.029
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 36 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
Score = 30.3 bits (65), Expect = 0.27
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +2
Query: 173 KEFSWRTQTGSGKTLAYILPAIVHINNHRLFGE----VMVRLLWSWR-LPES*HNKFSKL 337
K+ + +TGSGKT AY++P + + + E + LL R L + +N KL
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
Query: 338 LQILDTHLMFV 370
H+ F+
Sbjct: 112 TAFCSKHIRFI 122
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQ 629
L + LV+DEAD ML G+ ++ + + Q+ + SA L++
Sbjct: 162 LDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSK 207
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 33.5 bits (73), Expect = 0.029
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIVIATPGRL 462
A+++APTREL +QI + A + ++ + K +E+A L ++ I TP RL
Sbjct: 118 AIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Query: 463 IDFLEKG 483
+ ++ G
Sbjct: 178 VQAIQTG 184
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 197 TGSGKTLAYILPAIVHINNH 256
TGSGKT+AY+ P + + H
Sbjct: 92 TGSGKTIAYLFPILQKLQLH 111
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKII 575
V V+DEADR+ + GF Q I+
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHIL 214
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 197 TGSGKTLAYILPAIVHINNHR 259
TGSGKTL+Y++P IV +HR
Sbjct: 182 TGSGKTLSYVIP-IVQCLSHR 201
Score = 28.7 bits (61), Expect = 0.83
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 289 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATP 453
+V+ PTREL Q+ + + + ++ G R + L E ++++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 454 GRLIDFL 474
GRL+D +
Sbjct: 269 GRLVDHI 275
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIEQI 584
L + +V+DEADR+LD F+ + ++ +I
Sbjct: 283 LQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 28.7 bits (61), Expect = 0.83
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
G + L TR +++ Q DF G P R L++G+E VI TP
Sbjct: 93 GRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPP 149
Query: 457 RLIDFLEKGTTNLQR 501
RL+ ++ + NLQR
Sbjct: 150 RLLMNKDEISLNLQR 164
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 423
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 176 EFSWRTQTGSGKTLAYILPAIVHINNHRLFGEVMVRLLWSWRLPE 310
E ++ GSG+TLA + P ++ +N + LW+W L E
Sbjct: 834 ELAFGCVLGSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 337 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
A FG S + C G KR RD+ G + ++ PG
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPG 254
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 117 PLSLHLVAHNQENL--LLQSIE 58
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,541
Number of Sequences: 5004
Number of extensions: 64106
Number of successful extensions: 272
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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