Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060966.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       61   1e-11

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 60.9 bits (141), Expect = 1e-11
 Identities = 29/77 (37%), Positives = 40/77 (51%)
 Frame = +1

Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 459
           P  ++++PTREL  QI Q    F   S ++    +GG     Q   L  G  I++ATPGR
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGR 333

Query: 460 LIDFLEKGTTNLQRCTF 510
           L+DF+EKG        F
Sbjct: 334 LLDFVEKGRVKFSSVQF 350



 Score = 55.2 bits (127), Expect = 5e-10
 Identities = 25/58 (43%), Positives = 36/58 (62%)
 Frame = +3

Query: 12  NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLM 237



 Score = 54.4 bits (125), Expect = 1e-09
 Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
 Frame = +3

Query: 468 FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKII--EQIRP--DRQTLMWSA 617
           F+ KG  + ++V  LVLDEADRMLDMGF P I K++  E + P  +RQTLM+SA
Sbjct: 337 FVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSA 390



 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 194 QTGSGKTLAYILPAI 238
           QTGSGKT A+ +P I
Sbjct: 241 QTGSGKTAAFAVPII 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,195
Number of Sequences: 438
Number of extensions: 4513
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)