Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060966.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 119 2e-27
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 113 1e-25
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 113 1e-25
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 104 6e-23
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 104 6e-23
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 104 6e-23
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 95 4e-20
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 87 1e-17
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 86 2e-17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 86 2e-17
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 83 2e-16
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 81 5e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 80 1e-15
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 79 3e-15
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 78 5e-15
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 78 5e-15
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 75 6e-14
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 73 2e-13
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 69 2e-12
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 69 4e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 69 4e-12
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 67 1e-11
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 67 1e-11
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 64 1e-10
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 63 1e-10
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 63 1e-10
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 63 2e-10
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 60 2e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 59 2e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 57 9e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 54 7e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 54 7e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 53 2e-07
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 53 2e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 53 2e-07
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 53 2e-07
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 53 2e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 5e-07
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 52 5e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 51 6e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 50 1e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 50 1e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 50 2e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 50 2e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 49 3e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 48 6e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 2e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 46 2e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 46 2e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 46 3e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 46 3e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 45 5e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 44 7e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 41 7e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 38 0.005
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 33 0.18
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 0.71
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 31 0.94
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 31 0.94
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 31 0.94
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 30 1.2
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 30 1.2
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 29 2.2
At1g11920.1 68414.m01376 pectate lyase family protein similar to... 29 2.9
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.0
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 28 6.6
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 28 6.6
At5g19040.1 68418.m02264 adenylate isopentenyltransferase 5 / cy... 27 8.8
At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SD... 27 8.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 119 bits (287), Expect = 2e-27
Identities = 54/85 (63%), Positives = 66/85 (77%)
Frame = +1
Query: 256 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 435
P + GDGPI LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GVE
Sbjct: 165 PMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVE 224
Query: 436 IVIATPGRLIDFLEKGTTNLQRCTF 510
IVIATPGRLID +E TNL+R T+
Sbjct: 225 IVIATPGRLIDMMESNNTNLRRVTY 249
Score = 77.4 bits (182), Expect = 8e-15
Identities = 29/57 (50%), Positives = 43/57 (75%)
Frame = +3
Query: 21 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
E+TV G ++ P++ F + FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+
Sbjct: 86 EITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGI 142
Score = 71.7 bits (168), Expect = 4e-13
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = +3
Query: 483 HNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+ L V LVLDEADRMLDMGF+PQIRKI+ IRPDRQTL WSA
Sbjct: 241 NTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSA 285
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHIN 250
+TGSGKTL+Y+LPAIVH+N
Sbjct: 144 ETGSGKTLSYLLPAIVHVN 162
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 113 bits (272), Expect = 1e-25
Identities = 68/143 (47%), Positives = 83/143 (58%)
Frame = +1
Query: 256 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 435
P + + DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVE
Sbjct: 231 PRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Query: 436 IVIATPGRLIDFLEKGTTNLQRCTF*FLMRLIVCWIWDLNHKSEKSLSKYAQTDRL*CGQ 615
IVIATPGRLID LE TNL+R T+ L + K +S+ +
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 616 LTWPKRSXETC*XLLGRLHSDPY 684
TWP R ET L + DPY
Sbjct: 351 ATWP-REVET---LARQFLRDPY 369
Score = 74.1 bits (174), Expect = 8e-14
Identities = 26/57 (45%), Positives = 45/57 (78%)
Frame = +3
Query: 21 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
+++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G+
Sbjct: 152 DISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHRLFGE 271
+TGSGKTLAY+LPA+VH++ G+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQ 235
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 113 bits (272), Expect = 1e-25
Identities = 68/143 (47%), Positives = 83/143 (58%)
Frame = +1
Query: 256 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 435
P + + DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVE
Sbjct: 231 PRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Query: 436 IVIATPGRLIDFLEKGTTNLQRCTF*FLMRLIVCWIWDLNHKSEKSLSKYAQTDRL*CGQ 615
IVIATPGRLID LE TNL+R T+ L + K +S+ +
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 616 LTWPKRSXETC*XLLGRLHSDPY 684
TWP R ET L + DPY
Sbjct: 351 ATWP-REVET---LARQFLRDPY 369
Score = 74.1 bits (174), Expect = 8e-14
Identities = 26/57 (45%), Positives = 45/57 (78%)
Frame = +3
Query: 21 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
+++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G+
Sbjct: 152 DISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHRLFGE 271
+TGSGKTLAY+LPA+VH++ G+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQ 235
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 104 bits (249), Expect = 6e-23
Identities = 72/208 (34%), Positives = 100/208 (48%), Gaps = 3/208 (1%)
Frame = +3
Query: 3 ARGNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 182
A HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++
Sbjct: 139 AYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDI 198
Query: 183 VGVLKRVPAKRWPTSCQPLCT*TTTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW--TH 356
V + K K R L + ++T +F +
Sbjct: 199 VAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSR 258
Query: 357 ILCS*HVCVWWCS*KRAS-PGLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHILVLDEADR 533
I C+ C++ + K L G+ +N L L + LVLDEADR
Sbjct: 259 ISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 315
Query: 534 MLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
MLDMGFEPQIRKI+++I RQTLM++A
Sbjct: 316 MLDMGFEPQIRKIVKEIPTKRQTLMYTA 343
Score = 93.9 bits (223), Expect = 9e-20
Identities = 44/78 (56%), Positives = 57/78 (73%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 457 RLIDFLEKGTTNLQRCTF 510
RL D LE +L++ ++
Sbjct: 290 RLNDILEMRRISLRQISY 307
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHR 259
+TGSGKTL Y++P +H+ R
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIR 224
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 104 bits (249), Expect = 6e-23
Identities = 72/208 (34%), Positives = 100/208 (48%), Gaps = 3/208 (1%)
Frame = +3
Query: 3 ARGNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 182
A HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++
Sbjct: 139 AYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDI 198
Query: 183 VGVLKRVPAKRWPTSCQPLCT*TTTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW--TH 356
V + K K R L + ++T +F +
Sbjct: 199 VAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSR 258
Query: 357 ILCS*HVCVWWCS*KRAS-PGLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHILVLDEADR 533
I C+ C++ + K L G+ +N L L + LVLDEADR
Sbjct: 259 ISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 315
Query: 534 MLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
MLDMGFEPQIRKI+++I RQTLM++A
Sbjct: 316 MLDMGFEPQIRKIVKEIPTKRQTLMYTA 343
Score = 93.9 bits (223), Expect = 9e-20
Identities = 44/78 (56%), Positives = 57/78 (73%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 457 RLIDFLEKGTTNLQRCTF 510
RL D LE +L++ ++
Sbjct: 290 RLNDILEMRRISLRQISY 307
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHR 259
+TGSGKTL Y++P +H+ R
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIR 224
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 104 bits (249), Expect = 6e-23
Identities = 72/208 (34%), Positives = 100/208 (48%), Gaps = 3/208 (1%)
Frame = +3
Query: 3 ARGNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 182
A HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++
Sbjct: 139 AYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDI 198
Query: 183 VGVLKRVPAKRWPTSCQPLCT*TTTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW--TH 356
V + K K R L + ++T +F +
Sbjct: 199 VAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSR 258
Query: 357 ILCS*HVCVWWCS*KRAS-PGLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHILVLDEADR 533
I C+ C++ + K L G+ +N L L + LVLDEADR
Sbjct: 259 ISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 315
Query: 534 MLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
MLDMGFEPQIRKI+++I RQTLM++A
Sbjct: 316 MLDMGFEPQIRKIVKEIPTKRQTLMYTA 343
Score = 93.9 bits (223), Expect = 9e-20
Identities = 44/78 (56%), Positives = 57/78 (73%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 457 RLIDFLEKGTTNLQRCTF 510
RL D LE +L++ ++
Sbjct: 290 RLNDILEMRRISLRQISY 307
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHR 259
+TGSGKTL Y++P +H+ R
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIR 224
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 95.1 bits (226), Expect = 4e-20
Identities = 69/205 (33%), Positives = 97/205 (47%), Gaps = 5/205 (2%)
Frame = +3
Query: 18 HEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
HEVT +G + P FE + P + + + + G+ PTPIQAQ WPIA+ +++V + K
Sbjct: 421 HEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
Query: 198 RVPAKRWPTSCQPLCT*TTTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW--THILCS* 371
K R L + ++T RF + I C+
Sbjct: 481 TGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCT- 539
Query: 372 HVCVWWCS*KRASPGLGEGSRNSHCYSR*---IN*FLGKGHNQLTAVHILVLDEADRMLD 542
C++ + K P L E R + +N L V +LVLDEADRMLD
Sbjct: 540 --CLYGGAPK--GPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLD 595
Query: 543 MGFEPQIRKIIEQIRPDRQTLMWSA 617
MGFEPQIRKI+ +I P RQTLM++A
Sbjct: 596 MGFEPQIRKIVNEIPPRRQTLMYTA 620
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1
Query: 274 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 453
+GP L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG +IV+ATP
Sbjct: 506 NGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATP 565
Query: 454 GRLIDFLEKGTTNLQR 501
GRL D LE + Q+
Sbjct: 566 GRLNDILEMKMIDFQQ 581
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHR 259
+TGSGKTL Y++PA + + + R
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCR 501
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 87.0 bits (206), Expect = 1e-17
Identities = 41/78 (52%), Positives = 55/78 (70%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
GP LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++ERGV+IV+ATPG
Sbjct: 301 GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPG 360
Query: 457 RLIDFLEKGTTNLQRCTF 510
RL D LE +L + ++
Sbjct: 361 RLNDILEMKRISLHQVSY 378
Score = 74.5 bits (175), Expect = 6e-14
Identities = 59/176 (33%), Positives = 81/176 (46%), Gaps = 5/176 (2%)
Frame = +3
Query: 105 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTTAYSER*WSD 284
V + G+ P+PIQAQ WPIAM +++V + K K R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303
Query: 285 CFGLGAYQRVSTTNSASCCRFW--THILCS*HVCVWWCS*KRASPGLGEGSRNSHCYSR* 458
L + ++T +F + I C+ C++ + K P L E R
Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCA---CLYGGAPK--GPQLKEIERGVDIVVAT 358
Query: 459 ---IN*FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+N L L V LVLDEADRMLDMGFEPQIRKI+ ++ RQTLM++A
Sbjct: 359 PGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTA 414
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHI 247
+TGSGKTL Y++P +H+
Sbjct: 274 KTGSGKTLGYLIPGFMHL 291
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 18 HEVTVSGVEVHNPIQYFEEANFPD 89
HE+TVSG +V P+ FE P+
Sbjct: 147 HEITVSGGQVPPPLMSFEATGLPN 170
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 85.8 bits (203), Expect = 2e-17
Identities = 42/89 (47%), Positives = 58/89 (65%)
Frame = +1
Query: 244 HKQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 423
H + P RG P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LE
Sbjct: 213 HIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELE 272
Query: 424 RGVEIVIATPGRLIDFLEKGTTNLQRCTF 510
RGV+I++ATPGRL D LE+G +LQ F
Sbjct: 273 RGVDILVATPGRLNDLLERGRVSLQMVRF 301
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Frame = +3
Query: 459 IN*FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQI-RPD---RQTLMWSA 617
+N L +G L V L LDEADRMLDMGFEPQIRKI++Q+ P RQT+++SA
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSA 341
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
+ SG V P+ F E + + + ++ Y +PTP+Q PI +G++L+
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLM 187
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/91 (49%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Frame = +1
Query: 247 KQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 426
K PP+ GDGPI LV+APTREL QQI F +R V+GG+ +Q +L+R
Sbjct: 592 KDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKR 651
Query: 427 GVEIVIATPGRLIDFL--EKG-TTNLQRCTF 510
G EIV+ TPGR+ID L G TNL+R TF
Sbjct: 652 GTEIVVCTPGRMIDILCTSSGKITNLRRVTF 682
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
L V LV+DEADRM DMGFEPQI +II+ IRP+RQT+++SA
Sbjct: 677 LRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 718
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +3
Query: 21 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
E+ V G +V PI+++ + + +K + Y++P PIQ Q PI MSG++ +GV K
Sbjct: 516 ELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAK 574
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINN 253
+TGSGKTL ++LP + HI +
Sbjct: 574 KTGSGKTLGFVLPMLRHIKD 593
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 82.6 bits (195), Expect = 2e-16
Identities = 40/89 (44%), Positives = 56/89 (62%)
Frame = +1
Query: 244 HKQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 423
H Q P R P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LE
Sbjct: 226 HVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELE 285
Query: 424 RGVEIVIATPGRLIDFLEKGTTNLQRCTF 510
RGV+I++ATPGRL D LE+ ++Q F
Sbjct: 286 RGVDILVATPGRLNDLLERARVSMQMIRF 314
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Frame = +3
Query: 459 IN*FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSA 617
+N L + + + L LDEADRMLDMGFEPQIRKI+EQ+ R RQTL++SA
Sbjct: 298 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSA 354
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
+ SG V P+ F E + + + ++ Y +PTP+Q PI + G++L+
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLM 200
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 81.4 bits (192), Expect = 5e-16
Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Frame = +1
Query: 247 KQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 426
K PP+ GDGPI LV+APTREL QQI F + V+GG+ +Q +L+R
Sbjct: 459 KDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKR 518
Query: 427 GVEIVIATPGRLIDFL--EKG-TTNLQRCTF 510
G EIV+ TPGR+ID L G TNL+R T+
Sbjct: 519 GTEIVVCTPGRMIDILCTSSGKITNLRRVTY 549
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
L V LV+DEADRM DMGFEPQI +I++ IRPDRQT+++SA
Sbjct: 544 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 585
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 21 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
E+ V G +V PIQ++ + + +K + Y++P PIQAQ PI MSG++ +GV K
Sbjct: 383 ELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAK 441
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINN 253
+TGSGKTL ++LP + HI +
Sbjct: 441 KTGSGKTLGFVLPMLRHIKD 460
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/85 (44%), Positives = 54/85 (63%)
Frame = +1
Query: 256 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 435
P ++R +GPI ++ APTRELA QI A F +R + V+GG K EQ ++L+ G E
Sbjct: 294 PELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCE 353
Query: 436 IVIATPGRLIDFLEKGTTNLQRCTF 510
IV+ATPGRLID L+ + R ++
Sbjct: 354 IVVATPGRLIDMLKMKALTMMRASY 378
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
LVLDEADRM D+GFEPQ+R I+ QIRPDRQTL++SA + K
Sbjct: 379 LVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWK 419
Score = 60.5 bits (140), Expect = 1e-09
Identities = 22/58 (37%), Positives = 37/58 (63%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
+ VSG +VH P++ FE+ F + +K Y++PT IQ Q PI +SG++++G+ K
Sbjct: 216 IRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHI 247
+TGSGKT A++LP IVHI
Sbjct: 273 KTGSGKTAAFVLPMIVHI 290
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 79.0 bits (186), Expect = 3e-15
Identities = 39/79 (49%), Positives = 50/79 (63%)
Frame = +1
Query: 274 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 453
+GP A+V+APTRELAQQI++ F H R T + GG EQ + +G EIVIATP
Sbjct: 388 EGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATP 447
Query: 454 GRLIDFLEKGTTNLQRCTF 510
GRLID LE+ L +C +
Sbjct: 448 GRLIDCLERRYAVLNQCNY 466
Score = 40.7 bits (91), Expect = 9e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIE 578
L + +VLDEADRM+DMGFEPQ+ +++
Sbjct: 461 LNQCNYVVLDEADRMIDMGFEPQVAGVLD 489
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/56 (25%), Positives = 33/56 (58%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++G+
Sbjct: 301 ISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGI 356
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHIN 250
+TGSGKT A++LP + +I+
Sbjct: 358 ETGSGKTAAFVLPMLAYIS 376
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/89 (42%), Positives = 54/89 (60%)
Frame = +1
Query: 244 HKQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 423
H + P R P A++L+PTRELA QI A F + + V+ +GG P +Q R+LE
Sbjct: 218 HVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELE 277
Query: 424 RGVEIVIATPGRLIDFLEKGTTNLQRCTF 510
RG +I++ATPGRL D LE+ ++Q F
Sbjct: 278 RGCDILVATPGRLNDLLERARVSMQMIRF 306
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Frame = +3
Query: 459 IN*FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSA 617
+N L + + + L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SA
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSA 346
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/89 (42%), Positives = 54/89 (60%)
Frame = +1
Query: 244 HKQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 423
H + P R P A++L+PTRELA QI A F + + V+ +GG P +Q R+LE
Sbjct: 218 HVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELE 277
Query: 424 RGVEIVIATPGRLIDFLEKGTTNLQRCTF 510
RG +I++ATPGRL D LE+ ++Q F
Sbjct: 278 RGCDILVATPGRLNDLLERARVSMQMIRF 306
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Frame = +3
Query: 459 IN*FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSA 617
+N L + + + L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SA
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSA 346
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 74.5 bits (175), Expect = 6e-14
Identities = 35/82 (42%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = +1
Query: 268 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVI 444
RG P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV++ +
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAV 231
Query: 445 ATPGRLIDFLEKGTTNLQRCTF 510
TPGR+ID +++G NL F
Sbjct: 232 GTPGRVIDLMKRGALNLSEVQF 253
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +3
Query: 477 KGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+G L+ V +VLDEAD+ML +GF + I+E++ RQ++M+SA
Sbjct: 243 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSA 289
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +1
Query: 268 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVI 444
RG P LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++ +
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAV 243
Query: 445 ATPGRLIDFLEKGTTNLQRCTF 510
TPGR+ID +++G NL F
Sbjct: 244 GTPGRIIDLMKRGALNLSEVQF 265
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +3
Query: 477 KGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+G L+ V +VLDEAD+ML +GF + I++++ RQ++M+SA
Sbjct: 255 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSA 301
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 107 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI 238
K G+++ + L + ++ R +TG+GKTLA+ +P I
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/77 (44%), Positives = 45/77 (58%)
Frame = +1
Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 459
P LVL+PTRELA QI V + G +++ CV+GG+ K Q + GV+IVI TPGR
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGR 251
Query: 460 LIDFLEKGTTNLQRCTF 510
L D +E L +F
Sbjct: 252 LRDLIESNVLRLSDVSF 268
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +3
Query: 489 QLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+L+ V +VLDEADRMLDMGFE +R I+ RQ +M+SA
Sbjct: 262 RLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSA 304
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 24 VTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP + G++L+G+ K
Sbjct: 102 VTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAK 159
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHI 247
+TGSGKTLA+ +PAI+H+
Sbjct: 159 KTGSGKTLAFGIPAIMHV 176
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Frame = +1
Query: 259 PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDL 420
PI G+GPI L++ P+RELA+Q ++Q A Y +R+ GG R Q +
Sbjct: 216 PIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVV 275
Query: 421 ERGVEIVIATPGRLIDFLEKGTTNLQRCTF 510
+RGV IV+ATPGRL D L K +L C +
Sbjct: 276 KRGVHIVVATPGRLKDMLAKKKMSLDACRY 305
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 471 LGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
L K L A L LDEADR++D+GFE IR++ + + RQTL++SA + K
Sbjct: 293 LAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTK 346
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/56 (35%), Positives = 37/56 (66%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
+ V+G ++ PI+ F++ FP V +K G +PTPIQ QG P+ ++G++++G+
Sbjct: 134 IIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGI 189
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 68.5 bits (160), Expect = 4e-12
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Frame = +1
Query: 259 PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDL 420
PI G+GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q +
Sbjct: 167 PIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVV 226
Query: 421 ERGVEIVIATPGRLIDFLEKGTTNLQRC 504
++GV IV+ATPGRL D L K +L C
Sbjct: 227 KKGVHIVVATPGRLKDILAKKKMSLDAC 254
Score = 54.0 bits (124), Expect = 9e-08
Identities = 21/56 (37%), Positives = 37/56 (66%)
Frame = +3
Query: 24 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
+TV+G ++ PI+ F + FP + + +K G PTPIQ QG P+ +SG++++G+
Sbjct: 85 ITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGI 140
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 471 LGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
L K L A +L LDEADR++D+GFE IR + + + RQTL++SA + K
Sbjct: 244 LAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAK 297
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 197 TGSGKTLAYILPAIV 241
TGSGKTL ++LP I+
Sbjct: 143 TGSGKTLVFVLPMII 157
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = +1
Query: 226 LASHCA--HKQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 399
+ S C H + P +R + P+A+VLAPTREL Q++ A G + V GG P
Sbjct: 168 IISRCTTYHSEHPSDQRRN-PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPM 226
Query: 400 REQARDLERGVEIVIATPGRLIDFLEKGTTNL 495
Q +++GVE++I TPGR++D L K T L
Sbjct: 227 SGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 258
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = +3
Query: 36 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAKR 215
G V P+ F P + ++T GY PTPIQ Q P A++GK+L+ K
Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKT 161
Query: 216 WPTSCQPLCT*TTTAYSE 269
+ P+ + TT +SE
Sbjct: 162 -ASFLVPIISRCTTYHSE 178
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 471 LGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
L K +L + VLDE D ML GF Q+ +I + + Q L++SA ++++
Sbjct: 251 LSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISRE 303
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = +1
Query: 226 LASHCA--HKQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 399
+ S C H + P +R + P+A+VLAPTREL Q++ A G + V GG P
Sbjct: 31 IISRCTTYHSEHPSDQRRN-PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPM 89
Query: 400 REQARDLERGVEIVIATPGRLIDFLEKGTTNL 495
Q +++GVE++I TPGR++D L K T L
Sbjct: 90 SGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 471 LGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
L K +L + VLDE D ML GF Q+ +I + + Q L++SA ++++
Sbjct: 114 LSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISRE 166
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/71 (45%), Positives = 44/71 (61%)
Frame = +1
Query: 265 RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 444
R G P LVLAPTRELA+Q+++ + Y+ CV+GG Q L RGV++V+
Sbjct: 176 RSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVV 233
Query: 445 ATPGRLIDFLE 477
TPGR+ID +E
Sbjct: 234 GTPGRIIDLIE 244
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +3
Query: 489 QLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+L V LVLDEAD+ML +GFE + I+E + RQ++++SA
Sbjct: 249 KLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSA 291
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171
Query: 466 DFLEK 480
D L +
Sbjct: 172 DLLRR 176
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 498 AVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
A+ + VLDEAD ML GF+ QI I + + Q ++SA
Sbjct: 183 AIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSA 222
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 466 DFLEK 480
D L +
Sbjct: 170 DMLRR 174
Score = 34.7 bits (76), Expect = 0.058
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+ + VLDEAD ML GF+ QI I + + P Q ++SA
Sbjct: 182 IKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/65 (49%), Positives = 41/65 (63%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 466 DFLEK 480
D L++
Sbjct: 170 DMLKR 174
Score = 34.7 bits (76), Expect = 0.058
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+ + VLDEAD ML GF+ QI I + + P Q ++SA
Sbjct: 182 IKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +1
Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 459
P +VL PTREL++Q+ +VA H + R+ V GG+ R Q L +++V+ TPGR
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249
Query: 460 LIDFLEKG 483
++ +E+G
Sbjct: 250 ILQHIEEG 257
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKII 575
LVLDEAD M D GF P+IRK +
Sbjct: 267 LVLDEADTMFDRGFGPEIRKFL 288
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 191 TQTGSGKTLAYILPAI 238
+ TGSGKTLAY+LP +
Sbjct: 156 SHTGSGKTLAYLLPIV 171
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +1
Query: 271 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 450
G P LVL PTRELA+Q+ +G + + + C++GG Q L+RGV+IV+ T
Sbjct: 172 GRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGT 231
Query: 451 PGRLIDFLEK 480
PGR+ D +E+
Sbjct: 232 PGRIKDHIER 241
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 513 VLDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSAYL 623
VLDEAD ML MGF + I+ ++ QTL++SA L
Sbjct: 253 VLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATL 291
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 101 RCKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINN 253
+ K NG++ +S + R +TG GKTLA++LP + + N
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVN 160
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 57.2 bits (132), Expect = 9e-09
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 235 HCAHKQPPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQA 411
H P + R G ALV+ PTREL Q+ + H ++ V GG K ++
Sbjct: 90 HHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEK 149
Query: 412 RDLERGVEIVIATPGRLIDFLE 477
L +G+ I+IATPGRL+D L+
Sbjct: 150 ARLRKGISILIATPGRLLDHLK 171
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 197 TGSGKTLAYILPAIVHINNH 256
TG+GKT+AY+ P I H+ H
Sbjct: 76 TGTGKTIAYLAPLIHHLQGH 95
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 114 MGYKEPTPIQAQGWPIAMSGKNLV 185
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/68 (36%), Positives = 43/68 (63%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
G AL+L+PTR+LA+Q + + G + +R + + GG +Q +L +G +++IATPG
Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157
Query: 457 RLIDFLEK 480
RL+ L +
Sbjct: 158 RLMHLLSE 165
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYL 623
L V +V DEAD + MGF Q+ +I+ Q+ +RQTL++SA L
Sbjct: 171 LRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATL 214
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
FE N V +K GYK PTPIQ + P+ +SG ++V + +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHRLFGEVMVRLL 289
+TGSGKT A+++P + + H G V +L
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVPQGGVRALIL 104
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +1
Query: 289 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV V TPGR+
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVY 152
Query: 466 DFLEKGT 486
D +++G+
Sbjct: 153 DMIKRGS 159
Score = 49.2 bits (112), Expect = 3e-06
Identities = 47/193 (24%), Positives = 77/193 (39%)
Frame = +3
Query: 54 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAKRWPTSCQ 233
PI+ F++ D V +GV GYK+P+ IQ + + G++++ + K TS
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGK---TSMI 76
Query: 234 PLCT*TTTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRASP 413
+ S R L + +++ + H H C+ S
Sbjct: 77 AISVCQIVNISSR-KVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIK 135
Query: 414 GLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPD 593
L G + + +G Q AV +LVLDE+D ML G + QI + + D
Sbjct: 136 KLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHD 195
Query: 594 RQTLMWSAYLAQK 632
Q + SA L Q+
Sbjct: 196 IQVCLISATLPQE 208
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
A++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 466 DFLEKGTTNLQRC 504
D +KG L+ C
Sbjct: 255 DLTKKGVCVLKDC 267
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 477 KGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
KG L +LV+DEAD++L F+P + ++I+ + +RQ LM+SA
Sbjct: 259 KGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSA 305
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 212
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
A++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 466 DFLEKGTTNLQRC 504
D +KG L+ C
Sbjct: 255 DLTKKGVCVLKDC 267
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 477 KGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
KG L +LV+DEAD++L F+P + ++I+ + +RQ LM+SA
Sbjct: 259 KGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSA 305
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 212
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
A+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 466 DFLEKGTTNLQRCT 507
D +KG L+ C+
Sbjct: 262 DLTKKGVCVLKDCS 275
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 477 KGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
KG L +LV+DEAD++L F+P + +I + RQ LM+SA
Sbjct: 266 KGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSA 312
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 212
FE+ + G+ G++ P+PIQ + PIA++G++++ K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
A+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 466 DFLEKGTTNLQRCT 507
D +KG L+ C+
Sbjct: 262 DLTKKGVCVLKDCS 275
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 477 KGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
KG L +LV+DEAD++L F+P + +I + RQ LM+SA
Sbjct: 266 KGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSA 312
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 212
FE+ + G+ G++ P+PIQ + PIA++G++++ K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 462
AL+L+PTRELA Q ++ G H + + C+ GG E R LE GV +V TPGR+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRV 164
Query: 463 IDFLEK 480
D +++
Sbjct: 165 CDMIKR 170
Score = 44.0 bits (99), Expect = 9e-05
Identities = 44/199 (22%), Positives = 79/199 (39%)
Frame = +3
Query: 27 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVP 206
T G+E PI F + + V +GV G+++P+ IQ + + G++++ +
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 207 AKRWPTSCQPLCT*TTTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVW 386
K + +C T+ E L + ++T + H H C+
Sbjct: 84 GKTSMIALS-VCQVVDTSSRE---VQALILSPTRELATQTEKTIQAIGLHANIQAHACIG 139
Query: 387 WCS*KRASPGLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHILVLDEADRMLDMGFEPQIR 566
S L G + + + + A+ +L+LDE+D ML GF+ QI
Sbjct: 140 GNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIY 199
Query: 567 KIIEQIRPDRQTLMWSAYL 623
+ + PD Q + SA L
Sbjct: 200 DVYRYLPPDLQVCLVSATL 218
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/71 (42%), Positives = 41/71 (57%)
Frame = +1
Query: 265 RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 444
R G G I V+ PTRELA Q + VA + + V GG +R +A+ + G +VI
Sbjct: 159 RNGTGVI--VICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVI 216
Query: 445 ATPGRLIDFLE 477
ATPGRL+D L+
Sbjct: 217 ATPGRLLDHLQ 227
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
LV+DEADR+L+ FE + KI++ + RQT ++SA K
Sbjct: 240 LVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSK 280
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 107 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI 238
K+ G Q + + K+ +TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
A++L PTRELA Q QV + + GG R+ L + V +++ TPGR++
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
Query: 466 DFLEKGTTNLQRC 504
D +KG L+ C
Sbjct: 285 DLAKKGVCVLKDC 297
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 477 KGHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
KG L +LV+DEAD++L + F+P I ++I+ + RQ LM+SA
Sbjct: 289 KGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSA 335
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 212
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 265 RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC--VFGGAPKREQARDLERGVEI 438
R G G LV+ PTRELA Q VA + Y T V GG ++ +A L +GV +
Sbjct: 224 RNGTG--VLVICPTRELAIQSYGVAKEL--LKYHSQTVGKVIGGEKRKTEAEILAKGVNL 279
Query: 439 VIATPGRLIDFLE 477
++ATPGRL+D LE
Sbjct: 280 LVATPGRLLDHLE 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
LV+DEADR+L+ FE ++KI+ + RQT ++SA + K
Sbjct: 305 LVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAK 345
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 197
FE + D + +K MG+ T IQA+ P M G++++G +
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAAR 199
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 107 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI 238
K+ G R + + + ++ +TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +1
Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQARDLERGVEIVIATPG 456
P +VL PT ELA Q+ + R+ V GG +R Q +LE+GV+++IATPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 457 RLIDFLEKGTTNLQ--RC 504
R + +G L RC
Sbjct: 512 RFTYLMNEGILGLSNLRC 529
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 194 QTGSGKTLAYILPAIVHINNHRLFG 268
Q+GSGKTLAY++P I + L G
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQG 443
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = +1
Query: 289 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 468
L+L PTRELA QI + + + ++ + GG REQ L +IV+ATPGR+ID
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 469 FL 474
L
Sbjct: 302 HL 303
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 27 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 182
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/42 (38%), Positives = 29/42 (69%)
Frame = +3
Query: 507 ILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
+L+LDEADR+L GF +I +++ RQT+++SA + ++
Sbjct: 316 VLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEE 357
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3
Query: 489 QLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
+L V +LVLDEAD +LDMGF I +II + +RQT ++SA + ++
Sbjct: 206 RLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEE 253
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 247 KQPP--PIRRGDGPIALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQAR 414
K PP P + +ALV+ PTRELA Q A H S + G EQ R
Sbjct: 118 KSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKR 177
Query: 415 DLERGVEIVIATPGRLIDFLE 477
+I++ATPGRL D +E
Sbjct: 178 MQTNPCQILVATPGRLKDHIE 198
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 107 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI 238
KD G + + L K+ + +TG+GKT+A++LP+I
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSI 113
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 465
AL++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLW 341
Query: 466 DFLEKGTTNL 495
+ + G +L
Sbjct: 342 ELMSAGEKHL 351
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 161 SYVWKEFSWRTQTGSGKTLAYILPAIVHINNHR 259
+Y K+ +TGSGKTLA+ LP + + + R
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDER 257
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 471 LGKGHNQLTAVHIL---VLDEADRMLDMGFEPQIRKIIE 578
+ G L +H L VLDEADRM++ G +++ I++
Sbjct: 344 MSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3
Query: 489 QLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
+L V +LVLDEAD +LDMGF +I +II + RQT ++SA ++ +
Sbjct: 232 RLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDE 279
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +1
Query: 247 KQPPPIRRGDGP--IALVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 417
K PP R P I LV+ PTRELA Q + + + V GG + R
Sbjct: 144 KAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRR 203
Query: 418 LERG-VEIVIATPGRLIDFLE 477
L++ +I++ATPGRL D ++
Sbjct: 204 LQKSPCQILVATPGRLKDHID 224
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 173 KEFSWRTQTGSGKTLAYILPAI 238
K+ + +TG+GKT+A++LP+I
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSI 139
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +3
Query: 489 QLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQK 632
+L V +LVLDEAD +LDMGF I +II + RQT ++SA + ++
Sbjct: 534 RLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEE 581
Score = 41.5 bits (93), Expect = 5e-04
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +1
Query: 247 KQPPPIRRGDGP--IALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQAR 414
K PP R P I LV+ PTRELA Q A H S + G EQ R
Sbjct: 446 KSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRR 505
Query: 415 DLERGVEIVIATPGRLIDFLE 477
+I++ATPGRL D +E
Sbjct: 506 MQTNPCQILVATPGRLKDHIE 526
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 107 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI 238
KD G + + L K+ + +TG+GKT+A++LPAI
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI 441
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQKKXRNLLXIT 659
+ IL+LDEADR+LD F+ Q+ II Q+ RQTL++SA KK ++L ++
Sbjct: 219 LQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSA-TQTKKVKDLARLS 270
Score = 34.3 bits (75), Expect = 0.076
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +1
Query: 274 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 453
DG ++++PTRELA Q V G + GG + ++ + I++ P
Sbjct: 142 DGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAP 201
Query: 454 GRLIDFLEKGTTNLQ 498
GRL+ +++ T N +
Sbjct: 202 GRLLQHMDE-TPNFE 215
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 128 TDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNHR 259
TD S++ + + ++ +TGSGKTLA+++P + ++ R
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRER 137
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQ 629
+ IL+LDEADR+LDMGF+ Q+ II ++ R+T ++SA Q
Sbjct: 168 LEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQ 210
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 283 IALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIATPG 456
+ ++++PTREL+ QI +VA F T V + + GG L E G ++I TPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 457 RLIDFLEK 480
RL D +++
Sbjct: 152 RLSDMMKR 159
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQ 629
+ IL+LDEADR+LDMGF+ Q+ II ++ R+T ++SA Q
Sbjct: 161 LEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQ 203
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +1
Query: 283 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 462
+ ++++PTREL+ QI +VA + + V E E G ++I TPGRL
Sbjct: 93 MGVIISPTRELSAQIHKVARAV-RLDFAKCREVEADMNTLE-----EEGANLLIGTPGRL 146
Query: 463 IDFLEK 480
D +++
Sbjct: 147 SDMMKR 152
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 226 LASHCAHKQPPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 402
L + +P RR D A VL+PTRELA QI + G +R + GG +
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130
Query: 403 EQARDLERGVEIVIATPGRLIDFL 474
+Q L + +++ATPGRL D +
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHM 154
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQKKXRNL 647
L ++ LVLDEADR+L+ FE + +I+E+I +R+T ++SA + KK R L
Sbjct: 162 LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMT-KKVRKL 212
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +3
Query: 42 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGL 52
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +1
Query: 283 IALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 456
+ ++++PTREL+ QI VA F T + V + + GG + + +E G ++I TPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 457 RLIDFLEK 480
RL D +E+
Sbjct: 152 RLSDIMER 159
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
+ IL+LDEADR+L+MGF+ Q+ II ++ R+T ++SA
Sbjct: 168 LEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSA 206
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 170 WKEFSWRTQTGSGKTLAYILPAI 238
+K+ + TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +3
Query: 510 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
LVLDEADR+LD+GF+ ++R I + + RQTL++SA
Sbjct: 207 LVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSA 242
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/67 (38%), Positives = 33/67 (49%)
Frame = +1
Query: 277 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 456
G ALV+ PTRELA Q+ + G +R + + GG Q L IVI TPG
Sbjct: 126 GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPG 185
Query: 457 RLIDFLE 477
R+ LE
Sbjct: 186 RIKVLLE 192
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 191
FE ++ + K +G ++PTP+Q P ++G++++G+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGL 101
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 104 CKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVH 244
CK+ G+++ + + ++ QTGSGKT A+ LP I+H
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/52 (36%), Positives = 37/52 (71%)
Frame = +3
Query: 486 NQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQKKXR 641
++L A+ + ++DEAD +LD+GF+ + KII+ + RQ+L++SA + ++ R
Sbjct: 527 SRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRR 578
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 289 LVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 462
L+L PTRELA QI + A H T + G + +Q R +I+IATPGRL
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 463 IDFLE 477
+D +E
Sbjct: 516 LDHIE 520
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 113 NGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI 238
+G+ + + L++ K+ + +TG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/52 (36%), Positives = 36/52 (69%)
Frame = +3
Query: 486 NQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAYLAQKKXR 641
++L A+ + ++DEAD +LD+GF + KII+ + RQ+L++SA + ++ R
Sbjct: 480 SRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRR 531
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 286 ALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 459
AL+L PTRELA QI + A H T + G K +Q R +I+IATPGR
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGR 467
Query: 460 LIDFLE 477
L+D +E
Sbjct: 468 LLDHIE 473
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 113 NGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI 238
+G+ + + L++ K+ + +TG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +3
Query: 18 HEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 176
+ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 123 YSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 197 TGSGKTLAYILPAIVHINNHRLFGEVMVRLLWSWRLPES*HNKFSKLLQILDTHLMFVTR 376
TGSGKT A+I P ++ + G V L + L + KL++ + H+ +T+
Sbjct: 187 TGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTK 246
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 ALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGR 459
A+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR
Sbjct: 194 AMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGR 253
Query: 460 LIDFLEKGTTNLQRCTF 510
+ + + G + C F
Sbjct: 254 IAEISKGGKLHTHGCRF 270
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 188 RTQTGSGKTLAYILPAIVHI 247
++ TGSGKTLAY+LP + I
Sbjct: 153 QSYTGSGKTLAYLLPILSEI 172
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 66 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 185
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 498 AVHILVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 617
++ ILVLDEAD +L G+E +R + I Q L+ SA
Sbjct: 200 SLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSA 239
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 116 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI 238
G+++ S + K+ R +TGSGKTLAY+LP +
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 107 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNHRLFGEVMVR 283
+D+G R + + K+ +TGSGKT Y+ P I + N L EV R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNR 154
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 30.7 bits (66), Expect = 0.94
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERG--VEIVIATP 453
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 454 GRLI 465
GR++
Sbjct: 175 GRVL 178
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 30.7 bits (66), Expect = 0.94
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERG--VEIVIATP 453
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 34 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 91
Query: 454 GRLI 465
GR++
Sbjct: 92 GRVL 95
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 30.7 bits (66), Expect = 0.94
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 286 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERG--VEIVIATP 453
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 454 GRLI 465
GR++
Sbjct: 175 GRVL 178
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = +1
Query: 409 ARDLERGVEIVIATPGRLIDFLE--KGTT 489
+++LE V+I++ATPGRL+D + KG T
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT 187
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 42 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA----QGWPIAMSGKNLVGVLKRVPA 209
E+ P +F++ + V ++G I+A +GW I + K L G +K VP
Sbjct: 529 EIQYPEDFFKDTYYKYGFNPEVGSVGMPVAETIRATMPPEGWTIPLFKKGLDGFIKEVPN 588
Query: 210 KRW 218
+ W
Sbjct: 589 RMW 591
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 280 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA--RDLERGVEIVIATP 453
P AL + PTRELA Q +V G + + + + A R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 454 GRL 462
G L
Sbjct: 223 GTL 225
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +3
Query: 492 LTAVHILVLDEADRMLDM-GFEP---QIRKIIEQIRPDRQTLMWSA 617
L + ILV DEAD ML GF +I K I ++ P+ Q L++SA
Sbjct: 236 LNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSA 281
>At1g11920.1 68414.m01376 pectate lyase family protein similar to
pectate lyase GI:14289169 from [Salix gilgiana]
Length = 384
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 143 SSRLADSYVWKEFSWRTQTGSGKTLAYILPA 235
+ R+ Y WK + WRT K AY +P+
Sbjct: 313 TKRIDSGYDWKRWKWRTSKDVFKNGAYFVPS 343
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 326 ICCANSLVGAKTKAIGPSPLRI 261
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 480 GHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDR 596
G L +ILVLDEA +D + I+KII Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 480 GHNQLTAVHILVLDEADRMLDMGFEPQIRKIIEQIRPDR 596
G L +ILVLDEA +D + I+KII Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At5g19040.1 68418.m02264 adenylate isopentenyltransferase 5 /
cytokinin synthase (IPT5) identical to adenylate
isopentenyltransferase (IPT5) [Arabidopsis thaliana]
GI:14279056
Length = 330
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 501 VHILVLDEADRMLDMGFEPQIRKIIEQIRPD 593
+H V + D+M+DMG ++R+I + D
Sbjct: 164 LHSFVSERVDKMVDMGLVDEVRRIFDPSSSD 194
>At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 295
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +3
Query: 120 YKEPTPIQAQGWPIAMSG----KNLVGVLKRVPAKR 215
YKE +Q +GWP MSG K V L RV AKR
Sbjct: 203 YKEGA-LQVKGWPTVMSGYILSKAAVIALTRVLAKR 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,394
Number of Sequences: 28952
Number of extensions: 348272
Number of successful extensions: 1109
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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