Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060965.seq
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 103 2e-23
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 5e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 1e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 50 2e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 49 7e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 39 6e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 38 0.001
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 38 0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 38 0.001
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 36 0.004
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 36 0.006
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 35 0.010
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 35 0.013
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 33 0.051
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.48
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 29 0.48
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 1.9
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.5
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.5
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 5.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.8
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 7.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 103 bits (247), Expect = 2e-23
Identities = 47/97 (48%), Positives = 64/97 (65%)
Frame = +3
Query: 258 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
K +G++ PTPIQ Q WP+AMSG++ + TGSG+ +
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTL 174
Score = 66.5 bits (155), Expect = 3e-12
Identities = 33/48 (68%), Positives = 35/48 (72%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KTL+Y LPAIVHIN QP + GDGPI LVLA TR LA QIQQ FG
Sbjct: 172 KTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFG 219
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 56.0 bits (129), Expect = 5e-09
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
+ ++GY++PT IQAQ P SG++ + +TGSG+ + L
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLL 474
Score = 49.6 bits (113), Expect = 4e-07
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQI 660
KT+A++LP HI +Q P++ G+GPIA+++ TR LA QI
Sbjct: 468 KTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 51.6 bits (118), Expect = 1e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTG 533
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A QTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 534 SGQNVG 551
SG+ G
Sbjct: 217 SGKTAG 222
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 500
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 501 GKN*LA*PQTGSGQNV 548
G++ + +TGSG+ V
Sbjct: 202 GRDVVGIAETGSGKTV 217
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.8 bits (111), Expect = 7e-07
Identities = 20/68 (29%), Positives = 41/68 (60%)
Frame = +3
Query: 339 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 519 *PQTGSGQ 542
+TGSG+
Sbjct: 292 IAETGSGK 299
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGD---GPIALVLAXTRXLAQQIQ 663
KT A+I+P I+ I+ PP+ + GP A+VLA TR LAQQIQ
Sbjct: 299 KTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
F+E D + + + +G+K PTPIQ + P+ ++ ++ + QTGSG+ L
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFAL 102
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHLAS 566
FE+ + G+ G++ P+PIQ + PIA+SG++ LA + G+G+ + S
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS 102
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +3
Query: 366 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A +TGSG+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGK 64
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/75 (26%), Positives = 41/75 (54%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 504 KN*LA*PQTGSGQNV 548
++ L +TGSG+ +
Sbjct: 127 RDVLGAAKTGSGKTL 141
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
F+ N +++ V G+K+ TP+QA P+ + K+ + TGSG+ +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTL 53
Score = 31.9 bits (69), Expect = 0.090
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAAD 678
KTLAY+LP + + G G AL++A TR LA QI V +
Sbjct: 51 KTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 510 *LA*PQTGSGQ 542
+A Q+G+G+
Sbjct: 61 VIAQAQSGTGK 71
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 619 ALVLAXTRXLAQQIQQVAADFGTH 690
AL+L+ TR LA QIQ V G H
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDH 115
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
F+ N + +G+ +G++ PT IQ + P+A+ GK+ + TGSG+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 34.7 bits (76), Expect = 0.013
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPP--IRRGDGPIALVLAXTRXLAQQIQQVA 672
KTLAY+LP + + P R G A+++A TR L QQI VA
Sbjct: 191 KTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 32.7 bits (71), Expect = 0.051
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
F+ + + + G+K PTPIQ + P+ + G++ + +TGSG+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGK 119
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 29.5 bits (63), Expect = 0.48
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 249 PXWASHVLPSREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 76
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 75 HDYFSDLVEDVYLNYGFFLTQG 10
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 619 ALVLAXTRXLAQQIQQVAADFG 684
AL+LA TR LAQQIQ+V G
Sbjct: 90 ALILAPTRELAQQIQKVVVALG 111
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -2
Query: 579 YVHNCWQDVGQRFDRNPFVATPTNSXQT*LSASLELEWASVLCNPLSLHL 430
YV NC ++ G F + +++TP NS +T + +L + +L L LHL
Sbjct: 590 YVTNCREEQGA-FCVSTYISTPDNSLRTLIVLALMALSSIILPLILQLHL 638
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 458 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 333
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 318 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 449
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 318 PYEVEEYRNKHEVTVS 365
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 447 GYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV--GLHLASNC 572
G+ +P PIQ+ P A G + + TGSG+ + G+ + +C
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC 184
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 93 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 13
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
F + ++ +K + EPT IQ + G+N + +TGSG+ L
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFAL 63
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 447 PLSLHLVAHNQENL--LLQSIE 388
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,047
Number of Sequences: 5004
Number of extensions: 54903
Number of successful extensions: 150
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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