Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060965.seq
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 64 8e-11
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 64 1e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 56 2e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 56 4e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 52 6e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 39 0.004
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 37 0.018
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 35 0.054
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 35 0.054
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 35 0.071
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 31 0.67
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 31 0.67
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.5
SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 29 2.7
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_15371| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 29 3.6
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.6
SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 29 4.7
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 28 6.2
SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14) 28 6.2
SB_11337| Best HMM Match : Bim_N (HMM E-Value=0.45) 28 6.2
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 6.2
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 28 6.2
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08) 28 6.2
SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097) 28 6.2
SB_27036| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 28 6.2
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/101 (35%), Positives = 57/101 (56%)
Frame = +3
Query: 240 PXLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 419
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
+ ++ + Y +PT IQ Q PIA+SG++ + +TGSG+
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGK 567
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KT A++ PA+VHI +QP ++ GDGPI L+ A TR L QQI A FG
Sbjct: 567 KTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFG 614
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 64.5 bits (150), Expect = 8e-11
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = +1
Query: 553 YILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFGTH 690
+ILP IVHIN+QP ++ GDGPI LVL TR LAQQ+Q+VA G H
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKH 158
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +3
Query: 312 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 479
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/86 (33%), Positives = 49/86 (56%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 464
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 465 PIQAQGWPIAMSGKN*LA*PQTGSGQ 542
PIQ Q P+ +SG++ + TGSG+
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGK 246
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
V QPF K+FY P + K +P E +E+R E + V G P++ + + +
Sbjct: 59 VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILD 118
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
+K Y++PTPIQAQ P+ MSG++ +A
Sbjct: 119 VLKKNSYEKPTPIQAQAIPVIMSGRDMIA 147
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/97 (29%), Positives = 50/97 (51%)
Frame = +3
Query: 270 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 449
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 450 YKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
++ PTPIQ Q MSG++ + +TGSG+ + L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL 128
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQI 660
KTLAY LP + + + P GD P+AL+L TR L QQ+
Sbjct: 122 KTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/69 (34%), Positives = 41/69 (59%)
Frame = +3
Query: 336 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L 515
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++ +
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 516 A*PQTGSGQ 542
+TGSG+
Sbjct: 143 GVAETGSGK 151
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGD----GPIALVLAXTRXLAQQIQQVAADFG 684
KT A+ +P +V I P I R + GP AL+LA TR LAQQI++ FG
Sbjct: 151 KTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFG 202
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 510 *LA*PQTGSGQNVGLHL 560
+A QTGSG+ L
Sbjct: 751 VMACAQTGSGKTAAFLL 767
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 510 *LA*PQTGSGQ 542
+A QTGSG+
Sbjct: 174 VMACAQTGSGK 184
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 491
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 492 AMSG 503
G
Sbjct: 197 MAHG 200
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +3
Query: 360 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSG 539
VSG I F E F + + + GY+ PTP+Q PI M+G++ +A QTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 540 QNVGLHL 560
+ L
Sbjct: 529 KTAAYML 535
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFGTH 690
KT AY+LP + + Q P+AL +A TR LA+QI A F H
Sbjct: 529 KTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDH 578
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
I FE+ + + + V GYK+PTP+Q PI ++ +A QTGSG+
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGK 925
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
++ F + G+ G+ PT IQ QG P+A+SG++ L +TGSG+ +
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTL 102
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
+ V +G+ PTPIQA P+A+ GK+ A TG+G+ L
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFML 66
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 35.1 bits (77), Expect = 0.054
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
FE+ + G+ G+ +P+PIQ + P+A++G++ LA + G+G+
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFGTH 690
KT AY++P + + + ALVL TR LA Q Q+ + G H
Sbjct: 97 KTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELGKH 141
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 35.1 bits (77), Expect = 0.054
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
FE+ + G+ G+ +P+PIQ + P+A++G++ LA + G+G+
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFGTH 690
KT AY++P + + + ALVL TR LA Q Q+ + G H
Sbjct: 97 KTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELGKH 141
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 34.7 bits (76), Expect = 0.071
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 345 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 509
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 510 *LA*PQTGSGQNVGLHL 560
+A Q+G+G+ L
Sbjct: 145 MIAQSQSGTGKTAAFVL 161
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHLAS 566
P V++ +K MG +P PIQ + P S K+ L +TG+G+++ L S
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPS 218
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 226 QNMRRPXWDSFHSNLSTKTFMIHILQFSKD 315
+N RR WDSFHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRG-DGPIALVLAXTRXLAQQIQQVAADFGTH 690
KT + + + I+ + G D ALVLA TR LAQQIQ+V G +
Sbjct: 135 KTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDY 185
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 485
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 318 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 449
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + + ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 398 SREELQPIRPNLTAANNSPISIEGAFFAKLSATSYNGQSTTSFSMV------YVSSSVRD 451
Query: 45 VYLNYGFFLTQGLVP 1
+YL+YG L L+P
Sbjct: 452 MYLSYGSLLNLDLLP 466
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
+G+ G+++P+PIQ + P+ G + +A ++G+G+
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGK 63
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
QG+K MG+ T IQ + + G++ L +TGSG+ +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTL 624
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 202 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 92
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_15371| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 223
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + S ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 42 SREELQPIRPSLTAANNSPISIEGAFFAKLSATSYSGQSTTSFSMV------YVSSSVRD 95
Query: 45 VYLNYGFFLTQGLVP 1
+YL+Y L L+P
Sbjct: 96 IYLSYDSLLNLDLLP 110
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 330 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 422
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 277 LLKGWSETNPNXGVACSAL 221
LLKGW TN N +AC+A+
Sbjct: 150 LLKGWGATNFNHAMACAAV 168
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
MG K+PT IQ P + G++ + +TGSG+ L
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFAL 63
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 613 PIALVLAXTRXLAQQIQQVAADFGTH 690
P ALVL+ TR LA QIQ+V G +
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDY 29
>SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)
Length = 1447
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + S ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 393 SREELQPIRPSLTAANNSPISIEGAFFAKLSATSYSGQSTTSFSMV------YVSSSVRD 446
Query: 45 VYLNYGFFLTQGLVP 1
+YL+Y L L+P
Sbjct: 447 MYLSYDSLLNLDLLP 461
>SB_11337| Best HMM Match : Bim_N (HMM E-Value=0.45)
Length = 286
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + S ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 159 SREELQPIRPSLTAANNSPISIEGAFFAKLSATSYSGQSTTSFSMV------YVSSSVRD 212
Query: 45 VYLNYGFFLTQGLVP 1
+YL+Y L L+P
Sbjct: 213 MYLSYDSLLNLDLLP 227
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 226 ALQRIXXSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFHGYYSS 83
AL+RI + ++ C +YRR CC L +W H + Y+SS
Sbjct: 197 ALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + S ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 159 SREELQPIRPSLTAANNSPISIEGAFFAKLSATSYSGQSTTSFSMV------YVSSSVRD 212
Query: 45 VYLNYGFFLTQGLVP 1
+YL+Y L L+P
Sbjct: 213 MYLSYDSLLNLDLLP 227
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 613 PIALVLAXTRXLAQQIQQVAADFGTH 690
P ALVL+ TR LA QIQ+V G +
Sbjct: 66 PQALVLSPTRELANQIQKVVLALGDY 91
>SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08)
Length = 1201
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + S ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 425 SREELQPIRPSLTAANNSPISIEGAFFAKLSATSYSGQSTTSFSMV------YVSSSVRD 478
Query: 45 VYLNYGFFLTQGLVP 1
+YL+Y L L+P
Sbjct: 479 MYLSYDSLLNLDLLP 493
>SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097)
Length = 812
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + S ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 483 SREELQPIRPSLTAANNSPISIEGAFFAKLSATSYSGQSTTSFSMV------YVSSSVRD 536
Query: 45 VYLNYGFFLTQGLVP 1
+YL+Y L L+P
Sbjct: 537 MYLSYDSLLNLDLLP 551
>SB_27036| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1059
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + S ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 360 SREELQPIRPSLTAANNSPISIEGAFFAKLSATSYSGQSTTSFSMV------YVSSSVRD 413
Query: 45 VYLNYGFFLTQGLVP 1
+YL+Y L L+P
Sbjct: 414 MYLSYDSLLNLDLLP 428
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 222 SREXFXPTKASRSSKSIATVAKPRRIIAEFVASSKFG-TTVSTAIIPVTRHDYFSDLVED 46
SRE P + S ++ + + ++ A+ A+S G +T S +++ Y S V D
Sbjct: 406 SREELQPIRPSLTAANNSPISIEGAFFAKLSATSYSGQSTTSFSMV------YVSSSVRD 459
Query: 45 VYLNYGFFLTQGLVP 1
+YL+Y L L+P
Sbjct: 460 MYLSYDSLLNLDLLP 474
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 267 VGVKRIPXWASHVLPSRE 214
VGV+ I WAS++LPSR+
Sbjct: 10 VGVRDIEQWASNLLPSRQ 27
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,707,533
Number of Sequences: 59808
Number of extensions: 404413
Number of successful extensions: 977
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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