Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060965.seq
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       61   8e-12
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 61.3 bits (142), Expect = 8e-12
 Identities = 29/64 (45%), Positives = 40/64 (62%)
 Frame = +3

Query: 351 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQT 530
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++ +A  QT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 531 GSGQ 542
           GSG+
Sbjct: 243 GSGK 246


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 508 ISWRSHKRVPVKTLAYILPAIVHINNQPPIRRGDGPIALVLA 633
           IS    +++P++  A I P  +  +   P  R  GP+A V A
Sbjct: 527 ISLLEQQKIPLRMTAGIDPKSIFNSGYRPKPRMSGPVAAVAA 568


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 633 RQDQSNRTITSPNRRLVIYVHNCW 562
           +Q QS +TIT     +VI    CW
Sbjct: 250 KQVQSRKTITRMLSAVVITFFICW 273


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 83  TGIIAVETVVPNLEEATNSA 142
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 309 KRSPYEVEEYRNKHEVTV 362
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,718
Number of Sequences: 438
Number of extensions: 3749
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)