Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060965.seq
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 106 2e-23
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 99 2e-21
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 99 2e-21
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 81 7e-16
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 81 7e-16
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 81 7e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 79 3e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 74 8e-14
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 74 1e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 73 2e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 60 1e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 54 7e-08
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 50 1e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 49 3e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 48 6e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 46 2e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 46 2e-05
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 46 3e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 45 5e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 44 1e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 43 2e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 42 3e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 42 3e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.002
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.002
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 39 0.004
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 38 0.005
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 37 0.011
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 36 0.019
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 36 0.019
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.019
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.025
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.025
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.025
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 34 0.077
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 34 0.10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 33 0.14
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.18
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 32 0.31
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 31 0.72
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 30 1.3
At2g25460.1 68415.m03049 expressed protein 30 1.3
At5g42150.1 68418.m05131 expressed protein 29 2.2
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 29 2.2
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 29 3.8
At2g31440.1 68415.m03841 expressed protein identical to cDNA end... 29 3.8
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 3.8
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 28 5.1
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 28 5.1
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 28 5.1
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.1
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.7
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.7
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.7
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR... 28 6.7
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 27 8.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 106 bits (254), Expect = 2e-23
Identities = 46/96 (47%), Positives = 63/96 (65%)
Frame = +3
Query: 261 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 440
L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 441 TMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
G+ EPTPIQ+QGWP+AM G++ + +TGSG+ +
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTL 151
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFGT 687
KTL+Y+LPAIVH+N QP + GDGPI LVLA TR LA QIQQ A+ FG+
Sbjct: 149 KTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGS 197
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 99.1 bits (236), Expect = 2e-21
Identities = 42/103 (40%), Positives = 67/103 (65%)
Frame = +3
Query: 240 PXLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 419
P F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
+ + + +G+ EPTPIQAQGWP+A+ G++ + +TGSG+ +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 217
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KTLAY+LPA+VH++ QP + + DGPI L+LA TR LA QIQ+ + FG
Sbjct: 215 KTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 99.1 bits (236), Expect = 2e-21
Identities = 42/103 (40%), Positives = 67/103 (65%)
Frame = +3
Query: 240 PXLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 419
P F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
+ + + +G+ EPTPIQAQGWP+A+ G++ + +TGSG+ +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 217
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KTLAY+LPA+VH++ QP + + DGPI L+LA TR LA QIQ+ + FG
Sbjct: 215 KTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 81.0 bits (191), Expect = 7e-16
Identities = 38/87 (43%), Positives = 53/87 (60%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA*PQTGSGQNVG 551
QAQ WPIAM G++ +A +TGSG+ +G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KTL Y++P +H+ R GP LVL+ TR LA QIQ+ A FG
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 81.0 bits (191), Expect = 7e-16
Identities = 38/87 (43%), Positives = 53/87 (60%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA*PQTGSGQNVG 551
QAQ WPIAM G++ +A +TGSG+ +G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KTL Y++P +H+ R GP LVL+ TR LA QIQ+ A FG
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 81.0 bits (191), Expect = 7e-16
Identities = 38/87 (43%), Positives = 53/87 (60%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA*PQTGSGQNVG 551
QAQ WPIAM G++ +A +TGSG+ +G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KTL Y++P +H+ R GP LVL+ TR LA QIQ+ A FG
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 79.0 bits (186), Expect = 3e-15
Identities = 33/102 (32%), Positives = 57/102 (55%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
+K Y++PT IQ Q PI +SG++ + +TGSG+ L
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVL 284
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADF 681
KT A++LP IVHI +QP ++R +GPI ++ A TR LA QI A F
Sbjct: 278 KTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 74.1 bits (174), Expect = 8e-14
Identities = 35/102 (34%), Positives = 57/102 (55%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
+K + Y++P PIQAQ PI MSG++ + +TGSG+ +G L
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVL 452
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQI 660
KTL ++LP + HI +QPP+ GDGPI LV+A TR L QQI
Sbjct: 446 KTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/102 (33%), Positives = 57/102 (55%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
+K + Y++P PIQ Q PI MSG++ + +TGSG+ +G L
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVL 585
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQI 660
KTL ++LP + HI +QPP+ GDGPI LV+A TR L QQI
Sbjct: 579 KTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Frame = +3
Query: 273 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 440
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 441 TMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVG 551
+ G+ PTPIQAQ WPIA+ ++ +A +TGSG+ +G
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLG 488
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KTL Y++PA + + + R +GP L+LA TR LA QIQ A FG
Sbjct: 485 KTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/100 (31%), Positives = 55/100 (55%)
Frame = +3
Query: 249 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 428
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
+ +K G PTPIQ QG P+ +SG++ + TGSG+ +
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTL 149
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQP---PIRRGDGPIALVLAXTRXLAQQIQQVAADF 681
KTL ++LP I+ + PI G+GPIALV+ +R LA+Q V F
Sbjct: 147 KTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/88 (30%), Positives = 49/88 (55%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 464
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 465 PIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
PIQ QG P+ ++G++ + TGSG+ +
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTL 198
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 339 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 507 N*LA*PQTGSGQ 542
A TGSG+
Sbjct: 180 ECFACAPTGSGK 191
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 315 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 488
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 489 IAMSGKN*LA*PQTGSGQ 542
A++GK+ LA TGSG+
Sbjct: 143 AALTGKSLLASADTGSGK 160
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 541 KTLAYILPAIVHI---NNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KT ++++P I +++ P + P+A+VLA TR L Q++ A G
Sbjct: 160 KTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 210
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/68 (39%), Positives = 38/68 (55%)
Frame = +3
Query: 357 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGS 536
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++ A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 537 GQNVGLHL 560
G+ L
Sbjct: 216 GKTAAFAL 223
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3
Query: 261 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
+ Y +PTP+Q PI + G++ +A QTGSG+
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGK 209
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 497
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 498 SGKN*LA*PQTGSGQNV 548
G++ + +TGSG+ +
Sbjct: 150 DGRDLIGIAKTGSGKTL 166
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 541 KTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAXTRXLAQQIQQVAADFG 684
KTLA+ +PAI+H+ I G P LVL+ TR LA QI V + G
Sbjct: 164 KTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAG 215
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVG 551
V + G+ P+PIQAQ WPIAM ++ +A +TGSG+ +G
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG 282
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/48 (45%), Positives = 27/48 (56%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KTL Y++P +H+ R GP LVL+ TR LA QIQ A FG
Sbjct: 279 KTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFG 325
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 419
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = +3
Query: 336 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L 515
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 516 A*PQTGSGQNVGLHL 560
+TGSG+ L
Sbjct: 355 GIAETGSGKTAAFVL 369
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPI---RRGDGPIALVLAXTRXLAQQIQQVAADF 681
KT A++LP + +I+ PP+ +GP A+V+A TR LAQQI++ F
Sbjct: 363 KTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF 412
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 267 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
Y +PTP+Q PI +G++ +A QTGSG+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGK 196
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
FE N V +K GYK PTPIQ + P+ +SG + +A +TGSG+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGK 78
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTG 533
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 534 SGQ 542
SG+
Sbjct: 199 SGK 201
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTG 533
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 534 SGQ 542
SG+
Sbjct: 199 SGK 201
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+ + QTGSG+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGK 59
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/75 (33%), Positives = 37/75 (49%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 504 KN*LA*PQTGSGQNV 548
K+ +A +TGSG+ +
Sbjct: 84 KDVVARAKTGSGKTL 98
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/95 (26%), Positives = 43/95 (45%)
Frame = +3
Query: 264 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
MG+ T IQA+ P M G++ L +TGSG+ +
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTL 206
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
PI+ F++ D V +GV GYK+P+ IQ + + G++ +A Q+G+G+
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGK 72
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
FE ++ + K +G ++PTP+Q P ++G++ L QTGSG+ L
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFAL 114
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
FE+ + G+ G++ P+PIQ + PIA++G++ LA + G+G+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
FE+ + G+ G++ P+PIQ + PIA++G++ LA + G+G+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 541 KTLAYILPAIVHI-NNQPPIRRGDGPIALVLAXTRXLAQQIQQ 666
KT+AY+ P I H+ + P + R G ALV+ TR L Q+ +
Sbjct: 80 KTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYE 122
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
MG++ PT +QAQ P+ +SG++ L TG+G+ +
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTI 82
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA + G+G+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA + G+G+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQ 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA + G+G+
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHLAS 566
F++ +G++ G+K T +Q P+ + GK+ LA +TG+G+ V L S
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPS 138
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGP---IALVLAXTRXLAQQ 657
KT+A++LP+I + PP R + I LV+ TR LA Q
Sbjct: 130 KTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHLAS 566
+ +K GY+ T +Q PI + GK+ LA +TG+G+ V L S
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPS 112
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAXTRXLAQQ 657
KT+A++LP+I + PP + PI ALV+ TR LA Q
Sbjct: 104 KTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRR-----GDGPIALVLAXTRXLAQQIQQVAADFGTH 690
KTLA++LP + + N P + G P LVL TR LA +QVAADF +
Sbjct: 146 KTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADFDAY 197
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +3
Query: 315 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 494
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 495 MSGKN*LA*PQTGSGQNVGLHL 560
+ G + + +TG G+ + L
Sbjct: 131 LDGADLVGRARTGQGKTLAFVL 152
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
FEE PD + ++ G+ PT +Q+ P + G + + TGSG+ +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTL 162
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
++ F + D ++G+K Y + T +Q+ P A+ G++ L +TGSG+ +
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTL 123
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVGLHL 560
+ +K G++ T +Q PI + GK+ LA +TG+G+ V L
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLL 438
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 541 KTLAYILPAIVHINNQPPIRRGDGP---IALVLAXTRXLAQQ 657
KT+A++LPAI + PP R I LV+ TR LA Q
Sbjct: 432 KTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +3
Query: 327 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 507 N*LA*PQTGSGQNV 548
+ L +TGSG+ +
Sbjct: 128 DVLGAARTGSGKTL 141
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 205 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 89
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At5g42150.1 68418.m05131 expressed protein
Length = 315
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 424 CNKV*RQWVTKNRRPFKLKAGR*LCLXRISWRSHKRVPVKTL 549
CNKV + ++ N+ P+K+ + I W +K+VP+ T+
Sbjct: 99 CNKV-KAFLDYNKIPYKVVEVNPISKKEIKWSDYKKVPILTV 139
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 422 CATRCKDNGLQRTDAHSSSRLADSYVWXELVGVATNGFRSKRWP 553
C T + GL+ + + ++RLA S V EL+ + F+++R P
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRERFFKTRRTP 1009
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 541 KTLAYILPAIVHI---NNQPPIRRGDGPIALVLAXTRXLAQQIQQVAADFG 684
KT ++++P I +++ P + P+A+VLA TR L Q++ A G
Sbjct: 23 KTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 73
>At2g31440.1 68415.m03841 expressed protein identical to cDNA
endonuclease III homologue (nth1 gene) GI:11181951
Length = 250
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 584 LFMCTIAGK--M*ANVLTGTRLWLRQLILXRHSYRPALSLNGRRFFVTHCLYTLLHIIRK 411
LF+ I+ K + VL+ T LWL LI+ +RP L L ++ Y LL +I
Sbjct: 20 LFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLKANVWWP----YALL-VITS 74
Query: 410 ICF 402
+CF
Sbjct: 75 VCF 77
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 417 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNVG 551
D V ++ G+ P+ QA P +SGK+ + +TGSG+ G
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHG 133
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 619 ALVLAXTRXLAQQIQQVAADFGTH 690
ALVLA TR LAQQI++V G +
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDY 133
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 619 ALVLAXTRXLAQQIQQVAADFGTH 690
ALVLA TR LAQQI++V G +
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDY 135
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 619 ALVLAXTRXLAQQIQQVAADFGTH 690
ALVLA TR LAQQI++V G +
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDY 133
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 276 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 431
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 276 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 431
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 966
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 107 VVPNLEEATNSAIIRLGLATVAIDLEDLEALVGXXNSLEGRTCDAXIGIRFTPT 268
V+PNL +ATN ++ L L L ++ +G + LE D ++ PT
Sbjct: 640 VLPNLSDATNLEVLNLALCE---SLVEIPPSIGNLHKLEKLIMDFCRKLKVVPT 690
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PQTGSGQNV 548
F E + + + +K + P IQA + + GK+ + Q+GSG+ +
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTL 426
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,709
Number of Sequences: 28952
Number of extensions: 279736
Number of successful extensions: 803
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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