Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060964.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 127 1e-29
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 67 1e-11
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 62 3e-10
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 61 9e-10
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 60 1e-09
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 37 0.017
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 35 0.053
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 33 0.28
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 30 2.0
SB_33424| Best HMM Match : zf-B_box (HMM E-Value=2.2e-18) 29 4.6
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 6.1
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 28 6.1
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 28 6.1
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 127 bits (306), Expect = 1e-29
Identities = 60/81 (74%), Positives = 69/81 (85%)
Frame = +1
Query: 22 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 201
+S QP I+LL+EGTD +QG PQL+SNI+ACQ + DAVRTTLGPRGMDKLIVD GKA I
Sbjct: 634 ASGPQPGIILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATI 693
Query: 202 SNDGATIMKLLDIVHPAARLL 264
SNDGATI+ LLDIVHPAA+ L
Sbjct: 694 SNDGATIINLLDIVHPAAKTL 714
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +3
Query: 246 PCRKTLVDIAKSQDAE 293
P KTLVDIAKSQDAE
Sbjct: 709 PAAKTLVDIAKSQDAE 724
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +3
Query: 240 RSPCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 419
+ P K++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A
Sbjct: 15 KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDD 74
Query: 420 AIEKIKEQ 443
I+ +K+Q
Sbjct: 75 MIDILKQQ 82
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +3
Query: 240 RSPCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 419
+ P K++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A
Sbjct: 212 KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDD 271
Query: 420 AIEKIKEQ 443
I+ +K+Q
Sbjct: 272 MIDILKQQ 279
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/92 (39%), Positives = 53/92 (57%)
Frame = +3
Query: 234 GYRSPCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTAS 413
G +P K LV+++K QD EVGDGTTSV +L E+LK + V +HP+ ++ R +
Sbjct: 72 GIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSV 131
Query: 414 RLAIEKIKEQAVKIDNKSPEEQRDLLLKCAST 509
+ A EK E A + PE+ R+ L+ A T
Sbjct: 132 K-AAEKALEAAAVDHSSDPEKFREDLMNIART 162
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +1
Query: 43 ILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLI--VDHNGKAVISNDGA 216
+ +L +G ++ + + +S+ + D V++TLGP+GMDK++ NG ++NDGA
Sbjct: 6 VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65
Query: 217 TIMKLLDIVHPAARLLWTLQSLK 285
TI+K + I +PAA++L L ++
Sbjct: 66 TILKSIGIDNPAAKILVELSKVQ 88
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 491 IEVCINAMSSKLIHQQKDHFSKIVVDAVLSL 583
+ + +SSK++ Q +DHF+K+ VDAVL L
Sbjct: 157 MNIARTTLSSKILVQHRDHFAKLAVDAVLRL 187
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Frame = +1
Query: 82 KPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIV 243
KPQ + +NI A + V DA+RT+LGP+GMDK+I NG I+NDGATI KL+D V
Sbjct: 21 KPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI-KLIDTV 75
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/88 (38%), Positives = 51/88 (57%)
Frame = +3
Query: 246 PCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 425
P + +A +QD GDGTTS V++ GE+LK+ +V EG+HPR++ A + A+
Sbjct: 174 PTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKAL 233
Query: 426 EKIKEQAVKIDNKSPEEQRDLLLKCAST 509
E ++E VK+ S E RD L+ A T
Sbjct: 234 EVLEE--VKV---SREMDRDTLINVAKT 256
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +3
Query: 270 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 449
++K QD EVGDGTTSV +LA E+LK + V +HP+ ++ R + + A EK E A
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVK-AAEKALEAAA 60
Query: 450 KIDNKSPEEQRDLLLKCAST 509
+ PE+ RD L+ A T
Sbjct: 61 VDHSSDPEKFRDDLMNIART 80
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 491 IEVCINAMSSKLIHQQKDHFSKIVVDAVLSL 583
+ + +SSK++ Q +DHF+K+ VDAVL L
Sbjct: 75 MNIARTTLSSKILVQHRDHFAKLAVDAVLRL 105
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Frame = +3
Query: 255 KTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKI 434
K +V+++KSQD E+GDGTT VV+LAG +L+ + ++ G+HP + A+++A+E +
Sbjct: 87 KLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHM 146
Query: 435 KEQA----VKIDNKSPEEQRDL--LLKCASTRCHR 521
A V DNK Q + L +RCHR
Sbjct: 147 DSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHR 181
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/56 (41%), Positives = 42/56 (75%)
Frame = +1
Query: 97 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 264
S+I A + V ++T+LGP+GMDK++V +G+ ++NDGATI+ ++++ H A+L+
Sbjct: 34 SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLM 89
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 51.6 bits (118), Expect = 6e-07
Identities = 32/78 (41%), Positives = 39/78 (50%)
Frame = +3
Query: 420 AIEKIKEQAVKIDNKSPEEQRDLLLKCASTRCHRN*FINRRITSXXXXXXXXXXXXXHFL 599
AI++IKE AV + E R LL +CA+T I + L
Sbjct: 1 AIKRIKELAVHVKKNDAGEMRQLLERCAATALSSK-LIATQKEFFAKMVVDAVMMLDELL 59
Query: 600 PLDMIGIKKVPGGALEDS 653
PLDMIG+KKV GGALEDS
Sbjct: 60 PLDMIGMKKVSGGALEDS 77
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +1
Query: 103 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 264
+ CQ ++ + GP G+D ++ +G +I+N G+ I++ L + +P R++
Sbjct: 6 LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMI 59
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 240
+ DAV TLGP+G + +I G I+ DG T+ K +++
Sbjct: 79 LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIEL 118
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 237 YRSPCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPR 383
Y++ + + D+A + + E GDGTT+ +LA I V +G +P+
Sbjct: 122 YQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQ 170
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +2
Query: 509 AMSSKLIHQQKDHFSKIVVDAVLSL 583
A+SSKLI QQ D F+ ++VDAV+++
Sbjct: 20 ALSSKLIGQQGDFFANMIVDAVMAV 44
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 330 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQ 443
GE + +PF+E+ +HP +I A R A I+ +K+Q
Sbjct: 2 GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQ 39
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 30.3 bits (65), Expect = 1.5
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 7/144 (4%)
Frame = +3
Query: 96 LQHQCLSTCRRCGQNHPGSPWDGQADCRSQWKGGYIKR-WCNNHEVTGYRSPCRKTL--- 263
+Q C TC CG P R+ W + +C+ V +S C+++
Sbjct: 769 MQFNCRKTCGMCGTRKSLKPAMPVCKDRTSWCRKWASYGYCHTKAVYMLKS-CKRSCGIC 827
Query: 264 VDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQ 443
D + S+ VGD + + V + V P + + R A R+ K +
Sbjct: 828 EDPSGSKATPVGDPSLPCEDKHKSCVYWASIGVCD-VRPTYMYKHCRLACRVCTPVKKHE 886
Query: 444 AVKIDNKSPEEQRD---LLLKCAS 506
DNK P+E+ D L KCAS
Sbjct: 887 GPPCDNKDPDEECDHWAKLGKCAS 910
>SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 854
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -2
Query: 149 PRVVLTASTTS*QALMLETSWGLPCVWSVPSLSKSICGCILLDLFHCSC 3
PRVVL A+ +A LE VW+ L + GC DLF SC
Sbjct: 631 PRVVLQAAPVPQKAGDLEPGADTRVVWTTKGLETILDGC--ADLFESSC 677
>SB_33424| Best HMM Match : zf-B_box (HMM E-Value=2.2e-18)
Length = 270
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 410 RCSDCSDQNTRVNTFFNKRLQPLQNFT--SQYHYRGGSIANLSVLRLCNVHK 261
RC++C +KRLQPLQ+ T S + G + +S C HK
Sbjct: 48 RCNECDHFVCEQCISAHKRLQPLQHHTILSLDEIKSGKLLAMSKTPYCTKHK 99
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = +2
Query: 500 CINAMSSKLIHQQKDHFSKIVVDAVLSLDTPLSASRHDWNQ 622
C + + + ++KD V+D +++DT ++ R W +
Sbjct: 1467 CFSGCRNTCVQREKDDICSRVIDLAIAVDTSMNMDRCTWTR 1507
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 108 CLSTCRRCGQNHPGSPWDGQADCRSQWKGGYIKRWC 215
C TC C N SP+ GQ +C S + G ++ C
Sbjct: 142 CQGTCD-CKNNATCSPFTGQCNCTSGFTGDRCEKQC 176
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 410 RCSDCSDQNTRVNTFFNKRLQPLQNFTSQYHY 315
R S+ ++QNT V+ +N +QP N+ S+Y Y
Sbjct: 209 RISEFANQNTLVS-IYNAIIQPHLNYCSEYEY 239
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 28.3 bits (60), Expect = 6.1
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = -3
Query: 475 SSGDLLSIFTACSLIFSMASLDAVLTALIRTRG*TPSSTNGFN-LFRISPANITTEVVPS 299
S+GDL + CS + +LDAVL++ RTR P T+ N L ISPA I V
Sbjct: 1006 STGDLKN----CS---AQGTLDAVLSSPSRTRSARPRRTSMNNDLCGISPAPINILKVDD 1058
Query: 298 PTSAS*DFAMSTRVLRQGER 239
S++ TR++R R
Sbjct: 1059 SESST---GRDTRLVRSARR 1075
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 90 ARLQHQCLSTCRRCGQN--HPGSPWDGQADCRSQWK 191
+RLQH+C++ C CG++ P P + D R WK
Sbjct: 412 SRLQHKCVNLCYGCGESDCSPLVP-PPEQDHRWDWK 446
>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 82 KPQLVSNINACQLVVDAVRTTLGPRGMD 165
K L+S I C LV +A +T+G +G D
Sbjct: 26 KKDLISEIRHCYLVSNAYPSTVGAKGFD 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,372,509
Number of Sequences: 59808
Number of extensions: 470299
Number of successful extensions: 1386
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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