Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060964.seq
         (684 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    25   2.9  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    24   5.1  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           24   5.1  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   5.1  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    23   6.8  

>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 459 NKSPEEQRDLLLKCASTRC 515
           + SPE   D L KC+ T+C
Sbjct: 141 SSSPEPNLDCLSKCSPTKC 159


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 676 KPHQVPGNESSRAPPG 629
           +P+ VPG ESS   PG
Sbjct: 8   RPNDVPGPESSAGEPG 23


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 37  PQILLLREGTDQTQGKPQLVSNINACQLVVDAVRT 141
           P I LLR+  +QT+ + Q  S++    L     RT
Sbjct: 354 PLIALLRQNCEQTRDRMQQTSDLQNRSLAAAQYRT 388


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 365 FNKRLQPLQNFTSQYHYRGGSIANLSVLRLCNVHK 261
           +NK ++P+QN T +   R G    L+ ++L NV++
Sbjct: 38  YNKLIRPVQNMTQKVDVRFG----LAFVQLINVNE 68


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 315 PRWFHRQPQRLETLQCPQESCGRVNDIQ*LHDCCTIV*YNR-LSIVIYNQL 166
           PR+    P RLE     +E  G +N IQ  H   T + Y R L +V   QL
Sbjct: 347 PRYIKIDPDRLEVFSTVKEITGFIN-IQAHHPNFTTLNYFRNLEVVGGRQL 396


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,639
Number of Sequences: 2352
Number of extensions: 15238
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)