Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060964.seq
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 131 5e-31
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 81 5e-16
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 75 3e-14
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 73 2e-13
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 71 9e-13
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 69 4e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 63 2e-10
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 63 2e-10
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 52 3e-07
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 52 3e-07
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.019
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 34 0.076
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 34 0.076
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 34 0.076
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 34 0.10
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 34 0.10
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.13
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.13
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.18
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 33 0.18
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi... 31 0.54
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro... 30 1.2
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.2
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 29 2.9
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 3.8
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,... 28 5.0
At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00... 28 6.6
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi... 27 8.8
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 131 bits (316), Expect = 5e-31
Identities = 72/137 (52%), Positives = 88/137 (64%)
Frame = +3
Query: 246 PCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 425
P K LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH + LIR+ RTAS LAI
Sbjct: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAI 136
Query: 426 EKIKEQAVKIDNKSPEEQRDLLLKCASTRCHRN*FINRRITSXXXXXXXXXXXXXHFLPL 605
K+KE AV I+ KS EE++ LL KCA+T I + L
Sbjct: 137 AKVKELAVSIEGKSVEEKKGLLAKCAATTLSSK-LIGGEKEFFATMVVDAVMAIGNDDRL 195
Query: 606 DMIGIKKVPGGALEDSF 656
++IGIKKVPGG + DSF
Sbjct: 196 NLIGIKKVPGGNMRDSF 212
Score = 129 bits (311), Expect = 2e-30
Identities = 62/81 (76%), Positives = 68/81 (83%)
Frame = +1
Query: 22 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 201
+S MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 202 SNDGATIMKLLDIVHPAARLL 264
SNDGATIMKLLDIVHPAA++L
Sbjct: 62 SNDGATIMKLLDIVHPAAKIL 82
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +2
Query: 512 MSSKLIHQQKDHFSKIVVDAVLSL 583
+SSKLI +K+ F+ +VVDAV+++
Sbjct: 166 LSSKLIGGEKEFFATMVVDAVMAI 189
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 81.4 bits (192), Expect = 5e-16
Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Frame = +3
Query: 243 SPCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 422
+P K LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I R AS A
Sbjct: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECA 132
Query: 423 IEKIKEQAVKIDNK-SPEEQRDLLLKCA-STRCHRN*FINRRITSXXXXXXXXXXXXXHF 596
+ ++ IDNK + E+ R LLK A +T C + +++
Sbjct: 133 RNALLKRV--IDNKDNAEKFRSDLLKIAMTTLCSK--ILSQDKEHFAEMAVDAVFRLKGS 188
Query: 597 LPLDMIGIKKVPGGALEDSF 656
L+ I I K PGG+L+DSF
Sbjct: 189 TNLEAIQIIKKPGGSLKDSF 208
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +1
Query: 49 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVD-HNGKAV-ISNDGATI 222
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 223 MKLLDIVHPAARLL 264
+K L I +PAA++L
Sbjct: 66 LKSLHIDNPAAKVL 79
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +1
Query: 67 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVH 246
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 247 PAARLLWTLQSLK 285
PAA++L L L+
Sbjct: 73 PAAKVLVELAELQ 85
Score = 68.1 bits (159), Expect = 5e-12
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = +3
Query: 246 PCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 425
P K LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 426 EKIKEQAVKIDNKSPEEQRDLLLKCAST 509
+ I+E K+ K + + L+ CA T
Sbjct: 133 KYIEE---KLVTKVEKLGKVPLINCAKT 157
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 509 AMSSKLIHQQKDHFSKIVVDAVLSL 583
+MSSKLI D F+ +VV+AVLS+
Sbjct: 158 SMSSKLISGDSDFFANLVVEAVLSV 182
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/56 (53%), Positives = 46/56 (82%)
Frame = +1
Query: 97 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 264
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ PAA++L
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKML 87
Score = 67.7 bits (158), Expect = 7e-12
Identities = 35/88 (39%), Positives = 54/88 (61%)
Frame = +3
Query: 246 PCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 425
P K LV+++KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI
Sbjct: 82 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
Query: 426 EKIKEQAVKIDNKSPEEQRDLLLKCAST 509
+ + AV ++ RD L+K AST
Sbjct: 142 DILTAMAVPVE----LTDRDSLVKSAST 165
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 70.5 bits (165), Expect = 9e-13
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Frame = +3
Query: 246 PCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 425
P K++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+ RA A +I
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSI 132
Query: 426 EKIKEQAVKIDNKSPEEQRDLLLKCASTRC---HRN*FINRRITSXXXXXXXXXXXXXHF 596
+ + A+ ID + L+ C T+ + + I +
Sbjct: 133 AVLDKIAMSIDINDRSQVLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREV 192
Query: 597 LPLDMIGIKKVPGGALEDS 653
I ++KVPGG EDS
Sbjct: 193 DIKKYIKVEKVPGGQFEDS 211
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +1
Query: 31 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 210
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 211 GATIMKLLDIVHPAAR 258
G I++ LD+ HPAA+
Sbjct: 61 GNAILRELDVAHPAAK 76
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Frame = +1
Query: 31 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 201
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 202 SNDGATIMKLLDIVHPAARLL 264
+ND ATI+ L+I HPAA+LL
Sbjct: 66 TNDAATIVNELEIQHPAAKLL 86
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +3
Query: 246 PCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 425
P K LV AK+Q E+GDG + AGE+L+ + + G+HP +I A A+
Sbjct: 81 PAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAV 140
Query: 426 EKIKEQAVKIDNKS 467
E I EQ V+ +++
Sbjct: 141 E-ILEQLVETGSET 153
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 62.9 bits (146), Expect = 2e-10
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Frame = +3
Query: 255 KTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKI 434
K +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E +
Sbjct: 9 KLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHL 68
Query: 435 KEQAVKIDNKSPEEQRDLLLKCASTRCHRN*FINRRITSXXXXXXXXXXXXXHF----LP 602
+ A K + L+ C +T + +NR S +
Sbjct: 69 ERIAQKFE-FDVNNYEPLVQTCMTTLSSK--IVNRCKRSLAEIAVKAVLAVADLERRDVN 125
Query: 603 LDMIGIKKVPGGALEDS 653
LD+I ++ GG LED+
Sbjct: 126 LDLIKVEGKVGGKLEDT 142
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +2
Query: 491 IEVCINAMSSKLIHQQKDHFSKIVVDAVLSL 583
++ C+ +SSK++++ K ++I V AVL++
Sbjct: 86 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAV 116
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 62.9 bits (146), Expect = 2e-10
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Frame = +3
Query: 255 KTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKI 434
K +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E +
Sbjct: 85 KLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHL 144
Query: 435 KEQAVKIDNKSPEEQRDLLLKCASTRCHRN*FINRRITSXXXXXXXXXXXXXHF----LP 602
+ A K + L+ C +T + +NR S +
Sbjct: 145 ERIAQKFE-FDVNNYEPLVQTCMTTLSSK--IVNRCKRSLAEIAVKAVLAVADLERRDVN 201
Query: 603 LDMIGIKKVPGGALEDS 653
LD+I ++ GG LED+
Sbjct: 202 LDLIKVEGKVGGKLEDT 218
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Frame = +1
Query: 46 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGAT 219
++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 220 IMKLLDIVHPAARLL 264
I++ +D+ + A+L+
Sbjct: 73 ILEQMDVDNQIAKLM 87
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +2
Query: 491 IEVCINAMSSKLIHQQKDHFSKIVVDAVLSL 583
++ C+ +SSK++++ K ++I V AVL++
Sbjct: 162 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAV 192
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +3
Query: 240 RSPCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 419
++P + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 420 AIE 428
++
Sbjct: 129 TLQ 131
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +1
Query: 103 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 264
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A ++
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMI 76
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +3
Query: 240 RSPCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 419
++P + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 420 AIE 428
++
Sbjct: 129 TLQ 131
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +1
Query: 103 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 264
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A ++
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMI 76
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 267 DIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 446
++A + GDGTT+ ILA EI+K V G +P L R + + IE+++++A
Sbjct: 120 EVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA 179
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 240
+ D V TLGPRG + +++D G + NDG TI + +++
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIEL 106
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 240
+ DAV TLGPRG + ++ + + VI NDG TI K +++
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIEL 93
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 258 TLV-DIAKSQDAEVGDGTTSVVILAGEILK 344
TL+ ++A + GDGTT+ +ILA E++K
Sbjct: 103 TLIQEVAIKMNESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 273 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 452
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 453 IDN 461
+++
Sbjct: 193 VED 195
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARL 261
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 124
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 273 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 452
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 453 IDN 461
+++
Sbjct: 193 VED 195
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARL 261
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 124
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +3
Query: 273 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 452
+K+ D GDGTT+ V+LA ++ V G +P ++ R + ++ + ++K+ + +
Sbjct: 130 SKTNDL-AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKE 188
Query: 453 IDN 461
+++
Sbjct: 189 VED 191
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARL 261
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 120
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 237
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIE 92
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 237
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIE 91
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 228
V +AV+ T+GP+G + +I G I+ DG T+ K
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +3
Query: 270 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 449
+A + + GDGTT +L IL V GV+ L + A + +K +AV
Sbjct: 107 VASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAV 166
Query: 450 KIDNKSPEE 476
I +PEE
Sbjct: 167 MI--STPEE 173
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 121 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARL 261
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 120
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 273 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 452
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K + +
Sbjct: 130 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKE 188
Query: 453 IDN 461
+++
Sbjct: 189 VED 191
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 118 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 249
+V + TLGP+G + ++ + G I NDG T++K +++ P
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDP 104
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 273 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 452
AK+ D GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +
Sbjct: 118 AKTNDL-AGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSRE 176
Query: 453 IDN 461
I++
Sbjct: 177 IED 179
>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 721
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 356 RLQPLQNFTSQYHYRGGSIANLSVLRLCNVHKSLAAG*TISSNFMIVAP 210
+L+ + F Y+ GS+A ++L C HK++A ++ M++ P
Sbjct: 498 KLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQP 546
>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 830
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 249 CRKTLVDIAKS--QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 419
C K + IA S Q A G+T V L EIL + F E+GV P++ + +V + +L
Sbjct: 730 CLKRALKIANSAQQVANTARGSTGSVTLFIEILNKYLYFYEKGV-PQITVESVESLIKL 787
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 46 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 168
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 407 CSDCSDQNTRVNTFFNKRLQPLQNFTSQYHYRGGSIANLSVLRL-CNVHKSLAAG 246
C D + +N+F NK+ P + Q Y G + L VL CN L G
Sbjct: 60 CPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVG 114
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 339 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 479
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 513
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 363 QQTASTSSEFH-QPISLPRWFHRQPQRLETLQCP 265
Q TA+TSS QP+ P F QPQ L+ LQ P
Sbjct: 409 QNTATTSSSTPPQPLPPPPPFQLQPQFLQPLQPP 442
>At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00646
F-box domain
Length = 492
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/99 (19%), Positives = 41/99 (41%)
Frame = +3
Query: 195 GYIKRWCNNHEVTGYRSPCRKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGV 374
G+I WC+ ++V P + +++ + D E + L++L +EE +
Sbjct: 327 GWIPEWCDGYQVFYLFKPSFSSAIELKQKVDVETMNMVHGDDCKYISTLRKLMSLIEE-I 385
Query: 375 HPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLL 491
P + RL E+ + + +D S + D++
Sbjct: 386 SPYAKRLFKKKGKRLMTEEETKLKMTVDEPSSSKCLDVM 424
>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1038
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +2
Query: 491 IEVCINAMSSKLIHQQKDHFSKIVVDAVLSLDT 589
I + +NA++++ H++ +H S+ ++ + LDT
Sbjct: 742 ISILVNALTNRGKHREAEHISRTCLEKNIELDT 774
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,692,167
Number of Sequences: 28952
Number of extensions: 328618
Number of successful extensions: 1038
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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