Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060962.seq
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 79 5e-16
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 68 2e-12
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 37 0.003
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 0.13
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 29 0.90
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.6
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.8
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 6.3
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.3
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.3
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 8.4
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 25 8.4
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.4
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 79.4 bits (187), Expect = 5e-16
Identities = 41/91 (45%), Positives = 50/91 (54%)
Frame = +1
Query: 235 HLSLFAHASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVXXXXXX 414
HLS E + LK GD+ KI LGAHIDGF ++VA T VV E V+G AADV
Sbjct: 91 HLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGPAADVIAAASA 150
Query: 415 XXXXXXXXXKPGTENYAVTEAIQKISAEYGC 507
KPG N+ VT+ + KI+ YGC
Sbjct: 151 ALKAAQRTIKPGNTNWQVTDIVDKIATSYGC 181
Score = 72.9 bits (171), Expect = 4e-14
Identities = 34/88 (38%), Positives = 56/88 (63%)
Frame = +2
Query: 2 VEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKE 181
V+ +++ V KYK+AG++ V+++V+ C P A +IC GD+L+ E KV+ +
Sbjct: 12 VDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVY-RT 70
Query: 182 KDSKKGIAFSTCVSVNNCICHFSPMRAN 265
KD+ KGIAF T VS N+ H SP++++
Sbjct: 71 KDAYKGIAFPTAVSPNDMAAHLSPLKSD 98
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +3
Query: 510 PIEGMLSHQLKQFRIDGEKSIILNPSEAQRXEHEKATLEKYEVYAMDVLIST 665
P+ GMLSHQ ++ IDG+K +ILNPS++QR E + T E+ EVY +D+L+ST
Sbjct: 183 PVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVST 234
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 67.7 bits (158), Expect = 2e-12
Identities = 30/73 (41%), Positives = 49/73 (67%)
Frame = +2
Query: 35 TKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFST 214
+KY+ AG +V++ QV ++CVP AS REI +GD L+ E + ++K ++ +KGIA T
Sbjct: 19 SKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKSQR-FEKGIAEPT 77
Query: 215 CVSVNNCICHFSP 253
+ VNNC +++P
Sbjct: 78 SICVNNCAYNYAP 90
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +1
Query: 163 QGFQKGERLQERHCIFNMRFCEQLHLSLFAHASEPDYILKKGDLAKIDLGAHIDGFIAVV 342
Q F+KG C+ N + ++ Y L+ GD+ KI +G H DG+ A++
Sbjct: 67 QRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALI 126
Query: 343 AHTVVV 360
+HT+VV
Sbjct: 127 SHTIVV 132
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 149 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPMRANRITF*KKEI 292
+E T + +E K GI F T VS+N+C H++P + +K++
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTTILKEKDV 195
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 274 ILKKGDLAKIDLGAHIDGFIAVVAHTV 354
ILK+ D+ K+D+G H++G I A T+
Sbjct: 189 ILKEKDVMKVDIGVHVNGRIVDSAFTM 215
>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -3
Query: 483 LNGFSDCIVLSTR---LQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMSYNSYKSINVS 313
L G S I LST L + K+ + M + C S +T + N C +Y + SIN
Sbjct: 12 LLGLSTAIPLSTEADALLDRKTIYFGMKAYDDVNCKGSTSYTISFNKCQAYPNINSINAL 71
Query: 312 T 310
T
Sbjct: 72 T 72
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 28.7 bits (61), Expect = 0.90
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 208 FNMRFCEQLHLSLFAHASEPDYILKKGDLAKIDLGAH 318
FN L +SLFAHA +++ K D K+ LG H
Sbjct: 210 FNNESPSFLDVSLFAHAEIINHLPLKNDQLKVVLGTH 246
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 2.1
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Frame = -2
Query: 535 WCESI--PSIGYNHIQHLFSE---WLQ*LHSSQYQASGDEEPLH*HDELPTKHLQHVQRL 371
W S+ PS+ Y + + FS + +SS + +P ++ L ++ LQ +L
Sbjct: 368 WQHSVWRPSLAYLQVVYSFSMRALLVNRQYSSAFAFFWKIDPYIRNERLVSQMLQAASQL 427
Query: 370 HFHPQLLYELQQL----*IHQCEHQDLSWLNLLFSECN--PVRSHGRKV---TNAVVHRN 218
H+H +LY + + ++DL + CN ++ K+ TN V+ ++
Sbjct: 428 HYHDLILYVINTYYSGNIMKNLGNKDLICITQSSPPCNISGIKPGSLKLSPTTNTVLAKS 487
Query: 217 AC*KCNAFLGVFLLFEN 167
C N + + L EN
Sbjct: 488 ICYWLNDAMALLFLLEN 504
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 676 TASPVDIRTSIAYTSYFSSVAFSCSXRCASDGFSIILFSP 557
TASP+ +RTS ++Y + + S C S + P
Sbjct: 216 TASPIPVRTSSVSSTYLTQDREASSKNCLSKALAFSSIEP 255
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 96 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 191
AF T +Q Y N NLY+ ++ S R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 6.3
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -2
Query: 364 HPQLLYELQQL*IHQCEHQDLSWLNLLFSECNPVRSHGRKVTNAVVHRNAC*KCNAFLGV 185
H Q+L L++L +H ++ SW L S + + +V + H N K N++ V
Sbjct: 167 HQQIL--LKKLKLHFPRRKENSWKRSLRSGLIELLNQSFEV-RMLTHENNN-KKNSY--V 220
Query: 184 FLLFENLVSLLQYKFIAKFTYF 119
F LF+ + S Y F + F YF
Sbjct: 221 FRLFDRVSSSTFYFFNSLFAYF 242
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 354 YCMSYNSYKSINVSTKIYLG*ISF 283
YC +YKS+ + T +Y+G F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 145 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 41
K + KF+ C +++A C+D L S H C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 107 ASAREICEFGDKLVLEETNKVFKKEKD 187
++ +E FG+KL E T K+ EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 8 KTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPD 106
K I ++L V + AG++++++ E KC+P+
Sbjct: 23 KQIRQELAVAQ---AGELISKINENCFDKCIPE 52
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 262 EPDYILKKGDLAKIDLGAHIDGFIAVVAHTVV 357
EP+Y+L G+L+ +L ID F T V
Sbjct: 382 EPEYLLMYGNLSNEELVERIDAFYMNARRTYV 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,795
Number of Sequences: 5004
Number of extensions: 59028
Number of successful extensions: 208
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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