Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060962.seq
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 75 6e-14
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 32 0.54
06_03_0730 - 23948801-23949079,23949528-23949588,23949828-239499... 30 1.6
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 30 1.6
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 29 2.9
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 29 5.0
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 29 5.0
07_01_0305 - 2181727-2184793,2185635-2185945 28 6.6
07_03_0808 - 21668100-21669092 28 8.7
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 28 8.7
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 28 8.7
03_05_0376 - 23598026-23598136,23598395-23598484,23598870-235989... 28 8.7
01_06_1435 + 37351653-37351990,37352241-37352424 28 8.7
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 74.9 bits (176), Expect = 6e-14
Identities = 41/88 (46%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Frame = +1
Query: 274 ILKKGD-LAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPG 450
I +KGD + D+G HIDGFIAVVAHT V+ + V+G+AADV +PG
Sbjct: 51 ICEKGDSYIRDDMGCHIDGFIAVVAHTHVIHDGAVTGKAADVLAAANTAAEVALRLVRPG 110
Query: 451 TENYAVTEAIQKISAEYGCSQLR-VCSH 531
+N VTEAIQK++A Y C + V SH
Sbjct: 111 KKNKDVTEAIQKVAAAYDCKIVEGVLSH 138
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/68 (44%), Positives = 44/68 (64%)
Frame = +3
Query: 513 IEGMLSHQLKQFRIDGEKSIILNPSEAQRXEHEKATLEKYEVYAMDVLISTGEAVGREMG 692
+EG+LSHQLKQF IDG K ++L+ S A + + A E+ EVYA+D++ STGE + +
Sbjct: 132 VEGVLSHQLKQFVIDGNK-VVLSVSNAD-TKVDDAEFEENEVYAIDIVTSTGEGKPKLLD 189
Query: 693 HQMYNIQK 716
+ I K
Sbjct: 190 EKQTTIYK 197
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 5 EKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEE 157
E ++ VVTKYK A I+N L+ V++ C P A +ICE GD + ++
Sbjct: 12 ELDLSSSDVVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDD 62
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 274 ILKKGDLAKIDLGAHIDGFIAVVAHTV 354
+L+ D+ K+D G HIDG+I A TV
Sbjct: 315 VLQYDDVMKLDFGTHIDGYIVDCAFTV 341
>06_03_0730 -
23948801-23949079,23949528-23949588,23949828-23949954,
23950449-23950485,23950987-23951061,23951489-23951598,
23952700-23952754,23952833-23952949,23953201-23953355,
23953577-23953634,23954239-23954460
Length = 431
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 223 CEQLHLSLFAHASEPDYILKKGDLAKIDLGAHIDGFIAV 339
C QLH++LF E ++ G +++D+ +DGF ++
Sbjct: 31 CLQLHMALFYWIEELEFECSVGIASRVDVRFSVDGFFSL 69
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +2
Query: 44 KLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVS 223
K A ++ RVLE P + EI + K++++ G S C S
Sbjct: 147 KAACELAARVLEYAGTLVKPSVTTDEIDKAVHKMIIDAGAY---PSPLGYGGFPKSVCTS 203
Query: 224 VNNCICHFSP 253
VN CICH P
Sbjct: 204 VNECICHGIP 213
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 274 ILKKGDLAKIDLGAHIDGFIAVVAHTV 354
+L+ D+ K+D G HI+G+I A TV
Sbjct: 259 VLQYDDVMKLDFGTHINGYIVDSAFTV 285
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 197 GIAFSTCVSVNNCICHFSP 253
G S C SVN CICH P
Sbjct: 465 GFPKSVCTSVNECICHGIP 483
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 197 GIAFSTCVSVNNCICHFSP 253
G S C SVN CICH P
Sbjct: 161 GFPKSVCTSVNECICHGIP 179
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 519 GMLSHQLKQFRIDGEKSIILNPSEAQRXEHEKATLEKYEVYAMDVLISTGEAVGREMG-H 695
G ++K+F I G S E + + A +E +E +AMDV E + EMG H
Sbjct: 337 GTTFDEVKEF-IGGTASDKEEEEEEEEGFLQAAAMEVHEGFAMDVAKIISETMASEMGFH 395
Query: 696 QMYNIQK 716
Q Q+
Sbjct: 396 QGMTFQE 402
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 150 NTSLSPNSHISLADASGTHFAMTCSRTRFTICPA 49
+ S P+S S + A+G F TC TR++ P+
Sbjct: 172 SASPRPSSPESFSSATGARFRSTCFSTRYSAIPS 205
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 580 FSIILFSPSIRNCFSWCESIPSIGYNHIQHLFSEWL 473
+S +P+ + CF +C P G +HL WL
Sbjct: 372 YSFDRLTPTQQQCFLYCTLFPEYGSISKEHLVDYWL 407
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 274 ILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGR 384
++ +LA DLG +DG +AV A V+ ++E R
Sbjct: 447 VVPDDNLAAGDLGDELDGIVAVTADAEVLDDAERGAR 483
>03_05_0376 -
23598026-23598136,23598395-23598484,23598870-23598935,
23599743-23599811,23599890-23599998,23600135-23600232,
23600339-23600420,23601163-23601242,23601346-23601516,
23601671-23601735,23601842-23601986,23602072-23602245,
23602498-23602572,23602831-23602959,23603295-23603432,
23603509-23603610,23604008-23604112,23604282-23604399,
23605752-23605909,23606159-23606261,23606515-23606582,
23606940-23607016,23608635-23608806
Length = 834
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = -3
Query: 528 RAYPQLATTIFSTYFLNGFSDCIVLSTRLQETKSRFTSMMSCQQNICSTSRDFTFTHNYC 349
+AY +L +T+F+T SD L E + F + + N+ T F H
Sbjct: 649 KAYTKLVSTMFTTLDKIAHSDPKTADIVLIENYAAFQNSLYDLANVVPTLA--KFYHEAS 706
Query: 348 MSYNSYKSINVSTKIYLG*ISFFQNVIRFAR 256
SY + ++S+ IYL F+ + +F+R
Sbjct: 707 ESYEQACTRHISSLIYLQ----FERLFQFSR 733
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 150 WRRLTRFSKRRKTPRK-ALHFQHAFL*TTAFVTFRPCERTGLH 275
WR ++RFS R +TP + A H Q F+ A R +R +H
Sbjct: 127 WRNISRFSVRTRTPTQVASHAQKYFI-RQANAGARDSKRKSIH 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,337,161
Number of Sequences: 37544
Number of extensions: 352571
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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