Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060962.seq
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)              121   5e-28
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         38   0.011
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)                   30   2.2  
SB_35199| Best HMM Match : zf-CCHC (HMM E-Value=0.034)                 30   2.2  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    28   6.7  
SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_58924| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)                   28   8.9  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score =  121 bits (292), Expect = 5e-28
 Identities = 53/84 (63%), Positives = 68/84 (80%)
 Frame = +2

Query: 5   EKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEK 184
           E TIAED+VVTKYK+AG + NR+L ++I       +AR +CE GD L+LEET+KV+KKEK
Sbjct: 13  EPTIAEDVVVTKYKMAGDMANRILLKLIEAANAGTTARTLCEKGDALILEETDKVYKKEK 72

Query: 185 DSKKGIAFSTCVSVNNCICHFSPM 256
           + KKGIAF TC+SVNNC+CHFSP+
Sbjct: 73  ELKKGIAFPTCISVNNCVCHFSPL 96



 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
 Frame = +1

Query: 259 SEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG---ESEVSGRAADVXXXXXXXXXXX 429
           SEPD  L  GDL KID G HIDGFIAV+ HT+VVG   E++V+GR ADV           
Sbjct: 98  SEPDITLNDGDLVKIDFGVHIDGFIAVIGHTIVVGCSKENKVTGRKADVLLAAYLASEVA 157

Query: 430 XXXXKPGTENYAVTEAIQKISAEYGCSQLR-VCSH 531
               KPG EN  VTE +QK++  + C  +  + SH
Sbjct: 158 QRMVKPGAENSTVTELVQKVAESFKCKPIEGMLSH 192



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +3

Query: 510 PIEGMLSHQLKQFRIDGEKSIILNPSEAQRXEHEKATLEKYEVYAMDVLISTGEAVGRE 686
           PIEGMLSHQLK+  IDGEK+II NP+E QR +H K     +EVY +DVL+STG+   +E
Sbjct: 185 PIEGMLSHQLKRNVIDGEKAIIQNPNEQQRKDHSKCEFAVHEVYGVDVLVSTGDGKTKE 243


>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = +2

Query: 122 ICEFGDKLVLEETNKVFKKEKDSK--KGIAFSTCVSVNNCICHFSP 253
           +C+ G+   ++ET + ++ E D K  KG+AF T  S+N+C  H++P
Sbjct: 82  LCDVGE--AIQETMESYEVELDGKTYKGLAFPTGCSLNHCAAHYTP 125



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 274 ILKKGDLAKIDLGAHIDGFIAVVAHTV 354
           +L   D+ KID G HI+G I   A TV
Sbjct: 26  VLSYDDVCKIDFGTHINGRIVDCAFTV 52



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 274 ILKKGDLAKIDLGAHIDGFIAVVAHTV 354
           +L   D+ KID G HI+G I   A TV
Sbjct: 132 VLSYDDVCKIDFGTHINGRIVDCAFTV 158


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 561  EKSIILNPSEAQRX-EHEKATLEKYEVYAMDVLISTGEAVGREMGH 695
            EK  I++  +  R  EH +  ++K+EV+  D L+S+GE + +   H
Sbjct: 2311 EKEAIVSSDDCGRDLEHVEMLMQKFEVFTRD-LVSSGERIAKLTEH 2355


>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
          Length = 664

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 38  KYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKK---GIAF 208
           K +++ Q  N++LE+V  K  P  S  +    G     +E NK   K+K   +   G  +
Sbjct: 158 KSQISDQSPNKLLEEVHRK--PQGSRTQ----GRNRKFKEQNKGQGKKKQELRNATGKKY 211

Query: 209 STCVSVNN--CICHFSPMRANRIT 274
           + C   N+    CH  PM AN +T
Sbjct: 212 NKCNKYNHFAAACHSPPMNANEVT 235


>SB_35199| Best HMM Match : zf-CCHC (HMM E-Value=0.034)
          Length = 327

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 38  KYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKK---GIAF 208
           K +++ Q  N++LE+V  K  P  S  +    G     +E NK   K+K   +   G  +
Sbjct: 158 KSQISDQSPNKLLEEVHRK--PQGSRTQ----GRNRKFKEQNKGQGKKKQELRNATGKKY 211

Query: 209 STCVSVNN--CICHFSPMRANRIT 274
           + C   N+    CH  PM AN +T
Sbjct: 212 NKCNKYNHFAAACHSPPMNANEVT 235


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = -2

Query: 421  H*HDELPT------KHLQHVQRLHFHPQLLYELQQL*IHQCEHQDLSWLNLL 284
            H ++ +PT      + + +VQ+L F   +   ++ L  H+C H+DL+  N+L
Sbjct: 883  HSYENIPTVSTEQPEEISYVQKLKFAHGIAQGMRHLEKHKCVHRDLAARNVL 934


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 107 ASAREICEFGDKLVLEETNKVFKKEKDSKKG 199
           A   E+ E G K +LEE  + F+KE + ++G
Sbjct: 877 AMKNELKEMGKKQILEEKERKFRKEMELQEG 907


>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 463 HSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFH 362
           H S    +    PLH HD +PT    H+ RLH H
Sbjct: 79  HDSIRTPTTPYSPLHTHDSIPTPTYPHL-RLHTH 111


>SB_58924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 700 IWXPISR--PTASPVDIRTSIAYTSYFSSV 617
           +W P+SR  P+A+PV++ TS+ +     S+
Sbjct: 78  VWKPVSRLLPSATPVNVNTSLHFLKQGRSI 107


>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
          Length = 238

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 219 THVENAMPFLESFSFLKTLLVSSNTSLSP 133
           TH ++ + F E+F+FL++L ++  T   P
Sbjct: 147 THQDDILAFRENFAFLRSLYLTDGTDTPP 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,797,970
Number of Sequences: 59808
Number of extensions: 426108
Number of successful extensions: 1335
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)