Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060962.seq
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...   106   2e-23
AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...    38   0.007
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        30   1.5  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    30   1.5  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    30   1.5  
AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a...    30   1.9  
AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal...    30   1.9  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...    28   5.9  
AF063007-5|AAD47125.1|  712|Caenorhabditis elegans Prion-like-(q...    28   7.9  

>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score =  106 bits (254), Expect = 2e-23
 Identities = 43/84 (51%), Positives = 66/84 (78%)
 Frame = +2

Query: 11  TIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDS 190
           T+A D VVTKY++A +I N VL++V+A     A A ++C+ GDKL+LE+T K++KKEK+ 
Sbjct: 22  TLANDAVVTKYQVAAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNF 81

Query: 191 KKGIAFSTCVSVNNCICHFSPMRA 262
            KGIA  TC+S++NCICH++P+++
Sbjct: 82  TKGIAMPTCISIDNCICHYTPLKS 105



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
 Frame = +1

Query: 259 SEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG---ESEVSGRAADVXXXXXXXXXXX 429
           SE   +LK G + K+DLG HIDG IA  AHTVVVG   +++V+G+ AD+           
Sbjct: 105 SEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGASKDNKVTGKLADLLRGTHDALEIA 164

Query: 430 XXXXKPGTENYAVTEAIQKISAEYGCSQL-RVCSHTN*SSSVLMERRVL 573
               +P TEN  +T+ I K +AE+G + +  + SH    + +  E++++
Sbjct: 165 IRSLRPDTENTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKII 213



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 32/60 (53%), Positives = 43/60 (71%)
 Frame = +3

Query: 510 PIEGMLSHQLKQFRIDGEKSIILNPSEAQRXEHEKATLEKYEVYAMDVLISTGEAVGREM 689
           PIE MLSHQL++  IDGEK II N  E Q+ E EK  ++K+E YA+D+L STG+   ++M
Sbjct: 192 PIENMLSHQLERNEIDGEKKIIQNSGEKQKGEIEKIKIDKHEAYAIDILFSTGKGQPKDM 251


>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 24/80 (30%), Positives = 42/80 (52%)
 Frame = +2

Query: 14  IAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSK 193
           I+ + V   Y+ + +   +V + V +   P  +  EICE      LE T++   KE+  +
Sbjct: 124 ISYEEVWQDYRRSAEAHRQVRKYVKSWIKPGMTMIEICER-----LETTSRRLIKEQGLE 178

Query: 194 KGIAFSTCVSVNNCICHFSP 253
            G+AF T  S+N+C  H++P
Sbjct: 179 AGLAFPTGCSLNHCAAHYTP 198



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 510 PIEGMLSHQLKQFRIDGEKSIILNPSEAQRXEHEKATLEKYEVYAMDVLISTGEAV---G 680
           PI  +  H + Q+RI   K++ +          E+  +E+ E+YA++   STG+      
Sbjct: 288 PIRNLNGHSIAQYRIHAGKTVPIVKGG------EQTKMEENEIYAIETFGSTGKGYVHDD 341

Query: 681 REMGHQMYNIQ 713
            E  H M N +
Sbjct: 342 METSHYMKNFE 352


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 183 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 46
           F  L T+    N +LSP S   LA AS +  + TC     T+ P N
Sbjct: 372 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 414


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 183 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 46
           F  L T+    N +LSP S   LA AS +  + TC     T+ P N
Sbjct: 372 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 414


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 183 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 46
           F  L T+    N +LSP S   LA AS +  + TC     T+ P N
Sbjct: 400 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 442


>AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a
           protein.
          Length = 658

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 226 EQLHLSLFAHASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADV 396
           +QLH S+    S+  ++ +   +   D+G H+  F   +AH    GE  V  R A V
Sbjct: 195 KQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAHDNSFGERIVHSRVARV 251


>AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal
           protein 20, isoform a protein.
          Length = 658

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 226 EQLHLSLFAHASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADV 396
           +QLH S+    S+  ++ +   +   D+G H+  F   +AH    GE  V  R A V
Sbjct: 195 KQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAHDNSFGERIVHSRVARV 251


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 712 CILYIWXPISRPTASPVDIRTSIAYTSYFSSVAFSCSXRCASDGFSIILFSPSIRNCFS 536
           C+ ++W P +   ASP + RT+    SY        +   AS  FSI+   P   NC +
Sbjct: 251 CVQFMWDPDTITNASPNNFRTAEHCESYCRDTCRRGAPEFASSKFSILDEVPR-TNCLA 308


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -3

Query: 549 GTASVGVRAYPQLATTIFSTYFLNGFSDCIVLSTRLQ--ETKSRFTSMMSCQQNICSTSR 376
           G A+V  +   QL T +F+       S CI L++  Q  +  S+      C   +CS + 
Sbjct: 169 GFANVNQKCACQLGTVLFN-------SQCITLASPGQNCQISSQCIDNSVCNNQMCSCNG 221

Query: 375 DFTFTHNYCMSYNSYKSINVSTKI 304
           ++     YC+ + + K     T +
Sbjct: 222 NYRLVFGYCVPFTNSKCQQTQTLV 245


>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 149 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPMR 259
           L++  K+F +  D  K I + T V V  C+    P+R
Sbjct: 163 LDKVEKLFTRANDKTKKIEYDTLVRVKKCLEEKKPVR 199


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 447 RLQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMSYNSYKSINVSTK 307
           RL  + S +T+  +C Q  C T +  T+T   C+  N    +  +TK
Sbjct: 709 RLLSSWSEWTTTGTCNQTACGTCQTLTYTRT-CLKTNGCFCMGSATK 754


>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +1

Query: 277 LKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTE 456
           L+ GDL  +D+  +  GF   +  T +VG+ +V   +  +               KPG +
Sbjct: 192 LENGDLCNVDVTVYHRGFHGDLNETFLVGD-KVDEESRKLVKVTFECLQQAIAIVKPGVK 250

Query: 457 NYAVTEAIQKISAEYGCSQLR-VCSH 531
              +   IQK +   G S ++  C H
Sbjct: 251 FREIGNVIQKHANANGFSVVKGYCGH 276


>AF063007-5|AAD47125.1|  712|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 59
           protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -3

Query: 567 SSLHQYGTASVGVRAYPQLATTIFSTYFLNGFSDCIVLSTRL--QETKSRFTSMMSCQQN 394
           +++H Y    V     PQL +T  S   ++  S+ I  S+R+  ++ +   TS+ +   N
Sbjct: 371 TNIHDYSFGFVEAAPSPQLPSTESSAASISNASENIFNSSRIMPKQVEPERTSIPNGDYN 430

Query: 393 ICSTSRDFTF-THNYCMSYNS 334
           + STS   ++   N  +SY++
Sbjct: 431 LKSTSPPLSYGQSNRGLSYDT 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,389,461
Number of Sequences: 27780
Number of extensions: 333875
Number of successful extensions: 1077
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)