Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060961.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 144 1e-35
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 75 7e-15
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 63 4e-11
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 55 1e-08
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 48 1e-06
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 44 2e-05
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 32 0.089
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.12
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.27
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.63
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 29 0.83
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 29 0.83
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 28 1.1
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 27 3.4
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 27 3.4
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.4
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 26 5.9
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.9
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 7.8
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 144 bits (348), Expect = 1e-35
Identities = 80/141 (56%), Positives = 96/141 (68%), Gaps = 4/141 (2%)
Frame = +2
Query: 254 LSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 430
+SKTA APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV+
Sbjct: 40 VSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVL 99
Query: 431 RYFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLV-IWASGGAAGATSLCFVYPLDFAR 607
RYFPTQALNFAFKDK+K++F G K R ASGGAAGA SL FVY LD+AR
Sbjct: 100 RYFPTQALNFAFKDKFKKMF--GYKKERDGYAKWFAGNLASGGAAGAASLLFVYSLDYAR 157
Query: 608 TRLAADV--GKGDGQREFSGL 664
TRLA D K G+R+F+GL
Sbjct: 158 TRLANDAKSAKKGGERQFNGL 178
Score = 36.7 bits (81), Expect = 0.003
Identities = 28/106 (26%), Positives = 47/106 (44%)
Frame = +2
Query: 317 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 496
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 497 GVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTRLAADVGK 634
G + + L+ WA +G S YPLD R R+ G+
Sbjct: 226 G-PLEGNFLASFLLGWAVTTGSGVAS----YPLDTIRRRMMMTSGE 266
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 75.4 bits (177), Expect = 7e-15
Identities = 45/124 (36%), Positives = 67/124 (54%)
Frame = +2
Query: 254 LSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 433
+S+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R
Sbjct: 33 VSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLR 85
Query: 434 YFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTR 613
FP A+ FA + KQ L + L+ G AGA S YPLD ARTR
Sbjct: 86 AFPYGAVQFATFNMLKQRALKNRSHQNLENHERLLF---GAIAGAASCATTYPLDIARTR 142
Query: 614 LAAD 625
L+ +
Sbjct: 143 LSIE 146
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 254 LSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 433
+ +T P + ++ QV + YK I A I K +G+ F+RG +N+++
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLK 295
Query: 434 YFPTQALNF 460
P ++ +
Sbjct: 296 IIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 62.9 bits (146), Expect = 4e-11
Identities = 40/122 (32%), Positives = 62/122 (50%)
Frame = +2
Query: 254 LSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 433
++K+ VAP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R
Sbjct: 30 VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88
Query: 434 YFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTR 613
FP + F ++ ++V + R T + SG AG S+ F YPL+ R R
Sbjct: 89 VFPYAGIKFVAYEQVRRVLI-----RDPEHETHARRFLSGSLAGTCSVFFTYPLELIRVR 143
Query: 614 LA 619
LA
Sbjct: 144 LA 145
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/129 (24%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 254 LSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 433
+S+T AP++R+K++L + + + + ++ + G+ SF+ GN NV++
Sbjct: 140 VSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWNRNGIRSFFVGNGINVLK 198
Query: 434 YFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTR 613
P ++ F + K+V G+ S + L + +GG AG+ + F+YP+D + R
Sbjct: 199 VMPESSIKFGTYEAMKRVL--GISSS-SENHSPLYSYLAGGMAGSVAQMFIYPVDTLKFR 255
Query: 614 L-AADVGKG 637
+ +D+ +G
Sbjct: 256 IQCSDLSRG 264
Score = 41.1 bits (92), Expect = 1e-04
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 269 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANVIRYFPT 445
+ P++ +K +Q +S+ Q K I+ + + + K G+ ++RG ++ FP
Sbjct: 246 IYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGILGMFPY 301
Query: 446 QALNFAFKDKYKQVFLGGVDKRRSSGVTSL-----VIWASGGAAGATSLCFVYPLDFART 610
A + + K+ ++G + R + + ++ A G +G+T V+PL+ RT
Sbjct: 302 SATDLGTFEGLKRTWIGILASRDNVDPQDVKLPNGLVMAFGALSGSTGATIVFPLNVIRT 361
Query: 611 RLAADVGKGDGQREFSGLGNCISK 682
RL G + G +C K
Sbjct: 362 RLQTQ-GTSAHPATYDGFIDCFYK 384
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +2
Query: 263 TAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 442
T V P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407
Query: 443 TQALNFAFKDKYKQ 484
+ A+++ + K+
Sbjct: 408 SVAISYLVYENCKK 421
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 48.4 bits (110), Expect = 1e-06
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Frame = +2
Query: 266 AVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 436
AVA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 437 FPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTRL 616
P +AL FA D Y +++ ++ SS S++ +G AG T V P + + RL
Sbjct: 76 APKRALKFASNDTYSKLWRKVFKRKDSSPALSIL---TGSCAGFTETFVVVPFELMKIRL 132
Query: 617 AADVGKGDGQREFSGLGNCISKI 685
DV +++G +C +KI
Sbjct: 133 -QDVKNAS---KYNGTVDCFTKI 151
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 536 VIWASGGAAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKI 685
V +A+G AG + + +YPLD +TR+ VGK D ++G +C+ KI
Sbjct: 10 VTFAAGAVAGISEVLTLYPLDVVKTRMQLSVGKSD----YNGTFDCLKKI 55
Score = 31.9 bits (69), Expect = 0.089
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +2
Query: 269 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 445
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 446 QALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTRL 616
A F K + L R +L+ GG G T L P D ++R+
Sbjct: 175 NAGYFGVIQKIRN-SLTPASSRIGEIRNNLIAGTIGGIFG-TFLS--TPFDVIKSRI 227
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/111 (26%), Positives = 52/111 (46%)
Frame = +2
Query: 284 RVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFA 463
+ +L LQ ++ + ++ Y A +I K++G+ +F+ G A ++R P
Sbjct: 135 KTRLQLQGRYNNPHFQSNYNYPSFRGAVKQIAKQEGMKTFFYGYRATILRDIPFSGFQLL 194
Query: 464 FKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTRL 616
F +K +QV ++ L+ +G AGA + PLD A+TRL
Sbjct: 195 FYEKLRQVAQKECGQKDIGVFRELI---TGSLAGAGAGFLTTPLDVAKTRL 242
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 31.9 bits (69), Expect = 0.089
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +2
Query: 329 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFK-DKYKQVFLGGVD 505
A Y DAF +I K +GL +F+RG F ++ F T + F +Y + FL
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL---FGTLHVGIQFPLYEYFKSFLDDFF 281
Query: 506 KRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTRL 616
++S+ +V+ A+ A+++ YP + RTRL
Sbjct: 282 GKKSN--FHIVLAATLSKIAASTV--TYPHEVLRTRL 314
Score = 30.3 bits (65), Expect = 0.27
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 257 SKTAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 427
S VAP++ VK Q Q + G + + I +G+ +RG +
Sbjct: 19 SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78
Query: 428 IRYFPTQALNFAFKDKYKQVFLGGVDKRRSS 520
+ Y P+ ++ F +K K +F GV+K+ +S
Sbjct: 79 LGYLPSWSIYFVVYEKCKVLF--GVNKKYTS 107
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 548 SGGAAGATSLCFVYPLDFARTRLAA 622
+GGAAG S V PLD +TR A
Sbjct: 11 AGGAAGLASSLVVAPLDVVKTRKQA 35
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 548 SGGAAGATSLCFVYPLDFARTRL 616
+GG AGA + YP +FA+TRL
Sbjct: 23 AGGVAGAIEISITYPAEFAKTRL 45
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 275 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 454
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 455 NFAFKDKYKQV 487
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 30.3 bits (65), Expect = 0.27
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 12/155 (7%)
Frame = +2
Query: 254 LSKTAVAPIERVKLLLQVQHVS----KQIAADQR-----YKGIVDAFV---RIPKEQGLL 397
L A AP++ VK LQ KQ A + Y+ +D + + +G
Sbjct: 61 LGAIATAPLDVVKTRLQSDFYKDRFLKQTAKSKSPLTAAYRHFMDTCIILKNVKVHEGTR 120
Query: 398 SFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSL 577
+ +RG N+I P +++NF K++ D + S + + AG +
Sbjct: 121 ALFRGLGPNLIGTIPARSINFFSYGNGKRIL---ADLFNNGQENSQIHLMAAAIAGVITS 177
Query: 578 CFVYPLDFARTRLAADVGKGDGQREFSGLGNCISK 682
P+ +TRL D G + S + +CI K
Sbjct: 178 AATNPIWLVKTRLQLDKKSGQAAQYRSSI-DCIIK 211
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 317 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 460
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 548 SGGAAGATSLCFVYPLDFARTRLAADVGK 634
+GG AG PLD +TRL +D K
Sbjct: 54 AGGVAGMLGAIATAPLDVVKTRLQSDFYK 82
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.63
Identities = 22/86 (25%), Positives = 35/86 (40%)
Frame = +2
Query: 365 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIW 544
F +++G+ + WRGN + Y A F K K + + V +
Sbjct: 55 FKETVQKEGVRALWRGNVVAELLYLVYGAAEFVAFSKLKHL------TENLAMNDHAVNF 108
Query: 545 ASGGAAGATSLCFVYPLDFARTRLAA 622
G +AG + YPLD RT+ A+
Sbjct: 109 LCGTSAGIFATLTSYPLDTMRTKFAS 134
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 28.7 bits (61), Expect = 0.83
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Frame = +2
Query: 344 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK-RRSS 520
Y I + I K++G+ F+RG +R P L F + KQ D+ SS
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVTALRDAPHAGLYVYFYELSKQNLHKLFDRFSPSS 200
Query: 521 GVT------SLVIWASGGAAGATSLCFVYPLDFARTRL 616
V ++V SG +GAT+ P D +TR+
Sbjct: 201 SVQGTVPHRNIVNVMSGLISGATATAITNPFDMLKTRV 238
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 28.7 bits (61), Expect = 0.83
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Frame = +2
Query: 269 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 448
V P+E V++ LQ+Q K + Y G D +I + GL +G R
Sbjct: 130 VGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKGYNPTAAREAHGL 184
Query: 449 ALNF-AFKDKYKQVFLGG--VDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTRLA 619
+ F A++ K D+ ++ G V G AG YP D ++++
Sbjct: 185 GMYFLAYEALVKNTMAKHHLTDRSQTPGWKLCVF---GAGAGYAMWLAAYPFDIVKSKIQ 241
Query: 620 AD 625
D
Sbjct: 242 TD 243
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +1
Query: 214 RSLRTSWLAVSPPPLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRCLRPYPQGAGS 393
R L S + PPP +++ A ++AP QQ P Q ++ YPQ
Sbjct: 195 RLLEDSAVKAQPPPPPPQQNYPPAASSSAPPMQYQQT--AYPPQQAPYPPVQAYPQAPQQ 252
Query: 394 PFILAW*LRQRH 429
P ++A +H
Sbjct: 253 PIVVAQPTEHKH 264
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +2
Query: 353 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTS 532
+++ + + +GL F+RG + V Y PT + ++ K+ +++S+ S
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPTTVSWWVCYEESKKYL-----QKQSNWDIS 173
Query: 533 LV--IWASGGAAGATSLCFVYPLDFARTR 613
++ I ++ G AT++ PLD +TR
Sbjct: 174 VIAPICSALGTVVATTIS--TPLDIVKTR 200
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 224 GLPGWRYLRRLSKTAVAPIERVKLLL 301
G+PG RYLR L+K V P+ + L+L
Sbjct: 370 GIPGSRYLRLLTKQKV-PLNAILLVL 394
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 65 YEITPNLLFKNQELVFRDPPSACAATPTSTY 157
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/91 (17%), Positives = 38/91 (41%)
Frame = +2
Query: 344 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKRRSSG 523
Y G + F I ++GL + G +I Y + F + +K + V +++
Sbjct: 58 YPGNIAGFKTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKYSTLVGAQKAHE 117
Query: 524 VTSLVIWASGGAAGATSLCFVYPLDFARTRL 616
+ + A+ +A + + P++ + R+
Sbjct: 118 YRTSIYLAASASAELLADIMLCPMEAIKVRV 148
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 369 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 262
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 241 VSPPPLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRCLRPYPQGAGSPFIL 405
++P + R HR +A T + A RRR ++ R L + GS +L
Sbjct: 56 LTPEVVTPRTPGHRIIKAKGAYTKDRSAKRRRGRIEIERHLLGEFDDNVGSNSLL 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,274
Number of Sequences: 5004
Number of extensions: 56681
Number of successful extensions: 211
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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