Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060961.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   241   4e-66
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   241   4e-66
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  241 bits (590), Expect = 4e-66
 Identities = 114/144 (79%), Positives = 126/144 (87%)
 Frame = +2

Query: 254 LSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 433
           +SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIR
Sbjct: 23  ISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82

Query: 434 YFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTR 613
           YFPTQALNFAFKDKYKQVFLGGVDK        +   ASGGAAGATSLCFVYPLDFARTR
Sbjct: 83  YFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTR 142

Query: 614 LAADVGKGDGQREFSGLGNCISKI 685
           LAADVGK  G+REF+GLGNC++KI
Sbjct: 143 LAADVGKAGGEREFTGLGNCLTKI 166



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 189 MSNLADPVAFAKDFLAGGI 245
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 275 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 433
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 22/117 (18%), Positives = 45/117 (38%)
 Frame = +2

Query: 335 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKRR 514
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D  + +     D ++
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGML---PDPKK 209

Query: 515 SSGVTSLVIWASGGAAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKI 685
           +     L+ W         +    YP D  R R+    G+   +  +    +C + I
Sbjct: 210 T---PFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATI 263


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  241 bits (590), Expect = 4e-66
 Identities = 114/144 (79%), Positives = 126/144 (87%)
 Frame = +2

Query: 254 LSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 433
           +SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIR
Sbjct: 23  ISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82

Query: 434 YFPTQALNFAFKDKYKQVFLGGVDKRRSSGVTSLVIWASGGAAGATSLCFVYPLDFARTR 613
           YFPTQALNFAFKDKYKQVFLGGVDK        +   ASGGAAGATSLCFVYPLDFARTR
Sbjct: 83  YFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTR 142

Query: 614 LAADVGKGDGQREFSGLGNCISKI 685
           LAADVGK  G+REF+GLGNC++KI
Sbjct: 143 LAADVGKAGGEREFTGLGNCLTKI 166



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 189 MSNLADPVAFAKDFLAGGI 245
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 275 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 433
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 22/117 (18%), Positives = 45/117 (38%)
 Frame = +2

Query: 335 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKRR 514
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D  + +     D ++
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGML---PDPKK 209

Query: 515 SSGVTSLVIWASGGAAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKI 685
           +     L+ W         +    YP D  R R+    G+   +  +    +C + I
Sbjct: 210 T---PFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATI 263


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 214 RSLRTSWLAVSPPPLQDRRSTHRACQAAAPS 306
           RS  T  + +  PP    RST +   A  P+
Sbjct: 601 RSSSTKGITIQEPPQWHTRSTEKRVSAGTPA 631


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 193 RTSPIRSRSLRTSWLAVSPPPLQDRRSTHRACQAAAPSTARQQ 321
           RTSP+  R    + +   P P     S+H   Q +  +  +QQ
Sbjct: 420 RTSPMEYRLYNPALIQSQPSPQYPSTSSHILQQPSIRTYTQQQ 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,436
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)