Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060864.seq
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D6L4 Cluster: Chromosome undetermined scaffold_4, who...    36   0.89 
UniRef50_Q22BX7 Cluster: Sec7 domain containing protein; n=1; Te...    33   6.3  
UniRef50_UPI0000DB7FFC Cluster: PREDICTED: similar to dumpy CG33...    33   8.3  

>UniRef50_A0D6L4 Cluster: Chromosome undetermined scaffold_4, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_4, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2432

 Score = 35.9 bits (79), Expect = 0.89
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 488  SSCLKFLIGYDDSIIVSIRISNKCCYKTSTMKCVTCKTSRQCAK*CSVNSVCEVYSHT 315
            S    +LI Y     +S + S KC Y++ST KC   K +  C+   + N  C + ++T
Sbjct: 1254 SDVQSYLINYSGCSKISNQDSKKCMYQSSTQKCKILKETNNCSD-FTTNIECAIRANT 1310


>UniRef50_Q22BX7 Cluster: Sec7 domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: Sec7 domain
           containing protein - Tetrahymena thermophila SB210
          Length = 1333

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 22/88 (25%), Positives = 46/88 (52%)
 Frame = +1

Query: 121 DNSLIVLQDRVPFCMSYRCKGNFILVRSEIKLATRHSLLQLTTTLDDKHYYVYLDACLHS 300
           + S++ LQ RVP+ +S      F   ++E  L +   +L  T  LDDK Y   +++ L+ 
Sbjct: 726 EKSIVSLQQRVPYDISSIYAKRF---KNE-NLTSE--ILSQTLLLDDKEYEDLINSILNE 779

Query: 301 RLNASV*EYTSQTELTLHYLAHCLEVLQ 384
               S+ +++ +T    H +  C+++++
Sbjct: 780 FNGYSIAQFSQRTHTFAHLIDICIQIMK 807


>UniRef50_UPI0000DB7FFC Cluster: PREDICTED: similar to dumpy
            CG33196-PB; n=4; Apis mellifera|Rep: PREDICTED: similar
            to dumpy CG33196-PB - Apis mellifera
          Length = 4920

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 485  SCLKFLIGYDDSIIVSIRISNKCCYKTSTMKCVTCKTSRQCAK*CSVNSVCEVYSHT 315
            SCL+  +G   S      +S++C     T  CV  K +  C   C +N+ CEV +H+
Sbjct: 3876 SCLQGYLGSPPSCRPECVVSSEC---PPTRACVNNKCTDPCLGSCGLNARCEVINHS 3929


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,025,436
Number of Sequences: 1657284
Number of extensions: 9361228
Number of successful extensions: 15658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15645
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)