Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060864.seq
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1278 - 35416451-35416458,35416777-35416969,35416970-354170...    29   3.4  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    28   7.8  

>02_05_1278 - 35416451-35416458,35416777-35416969,35416970-35417056,
            35417851-35417892,35418542-35418617,35418954-35421589
          Length = 1013

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 373  PGSVLSNVVLIQSVRCILIHLHLNVNVNTHL 281
            PG  LSN +L   ++ I +H+ L V++NT +
Sbjct: 958  PGHCLSNEILKMVIKPIFVHVLLQVHMNTEV 988


>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 172 RCKGNFILVRSEIKLATRHSLLQLTTTLDDKHYYVYLD 285
           RCKG +I + S  K     SLL+L + L  +  Y Y+D
Sbjct: 463 RCKGRYIPLASLTKRLGAKSLLKLKSNLLLETAYAYMD 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,085
Number of Sequences: 37544
Number of extensions: 239836
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)