Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060864.seq
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49394| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.2)            31   1.1  
SB_42756| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)                        30   2.0  
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_37137| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_58809| Best HMM Match : CXC (HMM E-Value=5.7)                       29   3.4  
SB_49493| Best HMM Match : CXC (HMM E-Value=9.4)                       29   3.4  
SB_12654| Best HMM Match : CXC (HMM E-Value=5.7)                       29   3.4  
SB_41968| Best HMM Match : zf-DNL (HMM E-Value=5.4)                    29   4.5  
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)                   28   6.0  
SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_49394| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.2)
          Length = 373

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 220 TRHSLLQLTTTLD--DKHYYVYLDACLHSRLNASV*EYTSQTELT 348
           T HSLL+  TTL    KHY  Y    LHS L       T+QT+ T
Sbjct: 303 TMHSLLRKHTTLATAQKHYTRYCTNTLHSLLRKHTALATAQTQYT 347


>SB_42756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR+++  ++H  K++ L+ I+ R+T+K        T +II S   RI+  S+   DA  
Sbjct: 288 GHRFLSLIDKHFSKDHKLRKIINRNTIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPT 347

Query: 185 TL 190
           +L
Sbjct: 348 SL 349


>SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR+++  ++H  K++ L+ I  R+T+K    +   T +II S   RI+  S+   DA  
Sbjct: 286 GHRFLSLIDKHFPKDHKLRKIFNRNTIKISYSYMSNTKQIIDSHNKRIIAASITTEDAPT 345

Query: 185 TL 190
           +L
Sbjct: 346 SL 347


>SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)
          Length = 356

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GH++++  ++H  K++ L+ I  R+T+K    +   T +II S   RI+  S+   DA  
Sbjct: 132 GHKFLSLIDKHFPKDHKLRKIFNRNTIKISYSYMSNTKQIIDSHNKRIIASSITTEDAPT 191

Query: 185 TL 190
           +L
Sbjct: 192 SL 193


>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*VFR--*PTLEIILS*CFRIVCHSVCLTDAK 181
           GHR+++  ++H  K++ L+ I  R+T+K   +R    T +II S   RI+  S+   DA 
Sbjct: 262 GHRFLSLIDKHFPKDHKLRKIFNRNTIKI-SYRCMNNTKQIIDSHNKRIIASSITTEDAP 320

Query: 182 VTL 190
            +L
Sbjct: 321 TSL 323


>SB_37137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR+++  ++H  K++ L+ I  R+T+K        T +II S   RI+  S+   DA  
Sbjct: 59  GHRFLSLIDKHFPKDHKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPT 118

Query: 185 TL 190
           +L
Sbjct: 119 SL 120


>SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8    GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
            GHR+++  ++H  K++ L+ I  R+T+K        T +II S   RI+  S+   DA  
Sbjct: 1089 GHRFLSLIDKHFPKDHKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPT 1148

Query: 185  TL 190
            +L
Sbjct: 1149 SL 1150


>SB_58809| Best HMM Match : CXC (HMM E-Value=5.7)
          Length = 202

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR+++  ++H  K++ L+ I  R+T+K        T +II S   RI+  S+   DA  
Sbjct: 93  GHRFLSLIDKHFPKDHKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPT 152

Query: 185 TL 190
           +L
Sbjct: 153 SL 154


>SB_49493| Best HMM Match : CXC (HMM E-Value=9.4)
          Length = 201

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR+++  ++H  K++ L+ I  R+T+K        T +II S   RI+  S+   DA  
Sbjct: 89  GHRFLSLIDKHFPKDHKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPT 148

Query: 185 TL 190
           +L
Sbjct: 149 SL 150


>SB_12654| Best HMM Match : CXC (HMM E-Value=5.7)
          Length = 202

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR+++  ++H  K++ L+ I  R+T+K        T +II S   RI+  S+   DA  
Sbjct: 93  GHRFLSLIDKHFPKDHKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPT 152

Query: 185 TL 190
           +L
Sbjct: 153 SL 154


>SB_41968| Best HMM Match : zf-DNL (HMM E-Value=5.4)
          Length = 323

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 424 INVVIRHPL*NVSLAKLPG-SVLSNVVLIQSVRCILIHLHLNVNVN 290
           +N+   H L  +SL  +P  S +  +   QS+ C++IH+ L V +N
Sbjct: 70  VNLTCNHHL--ISLLSMPRHSDVVAITCYQSLHCLVIHISLKVAIN 113


>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR+++  N+H  K++ L+ I  R+ +K        T +II S   RI+  S+   DA  
Sbjct: 436 GHRFLSLINKHFPKDHKLRKIFNRNIIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPT 495

Query: 185 TL 190
           +L
Sbjct: 496 SL 497


>SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GH++++  ++H  K++ L+ I  R+T+K        T +II S   RI+  S+   DA  
Sbjct: 343 GHKFLSLIDKHFLKDHKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPT 402

Query: 185 TL 190
           +L
Sbjct: 403 SL 404


>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
          Length = 918

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR+++  ++H  K+  L+ I  R+T+K        T +II S   RI+  S+   DA  
Sbjct: 266 GHRFLSLIDKHFPKDQKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIIASSITTVDAPT 325

Query: 185 TL 190
           +L
Sbjct: 326 SL 327


>SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   GHRYIT*NNRHKCKNYSLQMILFRSTVKF*V-FR*PTLEIILS*CFRIVCHSVCLTDAKV 184
           GHR ++  ++H  K++ L+ I  R+T+K        T +II S   RIV  S+   DA  
Sbjct: 157 GHRLLSLIDKHFPKDHKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIVASSITTEDAPT 216

Query: 185 TL 190
           +L
Sbjct: 217 SL 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,067,249
Number of Sequences: 59808
Number of extensions: 320351
Number of successful extensions: 634
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)