Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060864.seq
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR cla...    29   2.1  
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ...    28   6.5  
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f...    28   6.5  
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    27   8.6  
At1g45160.1 68414.m05177 protein kinase family protein contains ...    27   8.6  

>At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 709

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
 Frame = +1

Query: 124 NSLIVLQDRVPFCMSYRCKGNFILVRSEIKL---ATR-HSLLQLTTTLDDKHYYVYLDA- 288
           N +++    VP C +YR  G+ + V+   KL   +T+  + +     +D++ YY  LD  
Sbjct: 502 NFVVLPGKEVPACFTYRSHGSSVSVKVNQKLLHTSTKFKACILFENEVDNETYYFDLDTL 561

Query: 289 CLHSRLN 309
           C++++ N
Sbjct: 562 CVYTKTN 568


>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
           (UBP16) similar to ubiquitin-specific protease 16
           GI:11993477 [Arabidopsis thaliana]
          Length = 1008

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 452 SIIVSIRISNKCCYKTSTMKCVTCKTSRQCAK*CSV 345
           S+ VS       CY  +T +C  CK  R C+  C +
Sbjct: 65  SVAVSNVFHCPVCYCLATTRCSRCKAVRYCSGKCQI 100


>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 672

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 416 CYKTSTMKCVTCKTSRQCAK*CSVN 342
           C K +T KC  CK+ R C+  C  +
Sbjct: 67  CGKATTKKCSRCKSVRYCSAACQTS 91


>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 407 TSTMKCVTCKTSRQCAK*CSVNSVCEVYSHTLAFKREC-KHASRYT 273
           T+   C  C+TS   A+ C  + VC + S +    R C K  S Y+
Sbjct: 154 TNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGDSNYS 199


>At1g45160.1 68414.m05177 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 1067

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 151 VPFCMSYRCKGNFILVRSEIKLATRHSLLQLTTTLDDKHYYVYL 282
           V F  S+ C+ N  LV   +     +SLLQ    LD++   +Y+
Sbjct: 731 VRFFYSFTCRDNLYLVMEYLNGGDLYSLLQKVGCLDEEIARIYI 774


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,223,046
Number of Sequences: 28952
Number of extensions: 212105
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)