Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060862.seq
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q538A5 Cluster: Chorion b-ZIP transcription factor; n=1...   125   1e-27
UniRef50_Q2ULG4 Cluster: Microtubule-associated protein; n=4; Pe...    35   1.5  
UniRef50_Q18IA1 Cluster: Putative uncharacterized protein; n=2; ...    35   1.5  
UniRef50_Q5F342 Cluster: Putative uncharacterized protein; n=11;...    34   3.5  
UniRef50_A7PT04 Cluster: Chromosome chr8 scaffold_29, whole geno...    33   6.0  
UniRef50_A5BW09 Cluster: Putative uncharacterized protein; n=2; ...    33   8.0  
UniRef50_A2ECB6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q538A5 Cluster: Chorion b-ZIP transcription factor; n=1;
           Bombyx mori|Rep: Chorion b-ZIP transcription factor -
           Bombyx mori (Silk moth)
          Length = 512

 Score =  125 bits (301), Expect = 1e-27
 Identities = 59/59 (100%), Positives = 59/59 (100%)
 Frame = +2

Query: 332 MVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPTASFSEEY 508
           MVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPTASFSEEY
Sbjct: 1   MVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPTASFSEEY 59



 Score =  107 bits (257), Expect = 2e-22
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = +1

Query: 508 LKPEQLYASTMLHGSNSEFFQELXQLCSDPEREEQTRTIDSHKETEKRAC 657
           LKPEQLYASTMLHGSNSEFFQEL QLCSDPEREEQTRTIDSHKETEKRAC
Sbjct: 60  LKPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRAC 109


>UniRef50_Q2ULG4 Cluster: Microtubule-associated protein; n=4;
           Pezizomycotina|Rep: Microtubule-associated protein -
           Aspergillus oryzae
          Length = 903

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 292 DIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRS-DSP 447
           D G+ Y +  +  HG  A        FESSRPRS+ A   P+ E+ N   +SP
Sbjct: 767 DAGSVYQDTASNGHGPLARGYHSGSRFESSRPRSY-ASASPSEEKENSGLESP 818


>UniRef50_Q18IA1 Cluster: Putative uncharacterized protein; n=2;
           Halobacteriaceae|Rep: Putative uncharacterized protein -
           Haloquadratum walsbyi (strain DSM 16790)
          Length = 862

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 149 IHCTQAYSRDS*LFGSLKS*HFFRSSRRVQSILYKRLLKRSPARVGA-TISELNTPIQTP 325
           ++  + + +D   F  L S    RS R  QS   K  L  SP  V A + S LNT + +P
Sbjct: 434 LYFEELFDKDFDKFSDLDSLQHSRSFRETQSGFEKEPLDVSPEEVSALSQSSLNTYVNSP 493

Query: 326 KDMVFSQ 346
           +D  FS+
Sbjct: 494 RDYFFSR 500


>UniRef50_Q5F342 Cluster: Putative uncharacterized protein; n=11;
           Tetrapoda|Rep: Putative uncharacterized protein - Gallus
           gallus (Chicken)
          Length = 855

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 277 PSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNR 435
           PS  DD       P  K+ G F++E      F SS+  + KA   PT + + +
Sbjct: 58  PSSGDDFKPSSETPQRKQRGLFSDEEDSEDLFSSSKTVTSKATSLPTSKSTTK 110


>UniRef50_A7PT04 Cluster: Chromosome chr8 scaffold_29, whole genome
           shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome
           chr8 scaffold_29, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 320

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 277 PSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERS 429
           PS  D      T+P T R   + N+S+DS    S++P   +A K  TGE +
Sbjct: 226 PSSRDSAAESRTDPETDRDSEYLNQSEDSTSERSTKPTKTEAFK--TGEEA 274


>UniRef50_A5BW09 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 550

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = +2

Query: 344 QTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQ--GTVPTASFSEEY*NR 517
           +TS +    L++VD D  +P+K     G  G++HQ      PQ  G   TAS +    NR
Sbjct: 311 KTSWRATQKLQLVDTDVGRPQKTSSLKGNAGIVHQLTAPYNPQQNGVAKTASTAVYLLNR 370

Query: 518 NSYTRAQCFTVRTQSSSKNWXSCAPIQKGKNKHGPLILIKKPK 646
              T+A    ++ Q+  + W    P      + G L     PK
Sbjct: 371 LP-TKA----LKKQTPFEAWFDYQPKVMNLKRFGYLCFSFVPK 408


>UniRef50_A2ECB6 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 3352

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 27/140 (19%), Positives = 59/140 (42%)
 Frame = +1

Query: 232  SSINSIQKVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKE 411
            S+ +   K + + + P++ +D   +   P+T   G  +  +   +  + S+P S K +K 
Sbjct: 2040 STKDDTNKESTQPSTPNQEND--NKQDKPSTSLSGLLSGSNSQPQ--QQSQPDSTKDQKT 2095

Query: 412  PTGERSNRSDSPRKQXXXXXXXXXXXQLFRGILKPEQLYASTMLHGSNSEFFQELXQLCS 591
            P+ +   ++D  +++              +G  +   L        SN +  Q+  Q  S
Sbjct: 2096 PSDQEPQKNDQLQQKPDNNRPNSTQSHQQKGEQQLVSLTGLISNSLSNPKSSQQSPQQQS 2155

Query: 592  DPEREEQTRTIDSHKETEKR 651
             PE+ +Q +    H+E  K+
Sbjct: 2156 QPEQNQQNQDQPQHEEDNKQ 2175


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,715,399
Number of Sequences: 1657284
Number of extensions: 11116679
Number of successful extensions: 33521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33515
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)