Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060862.seq
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   3.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   7.3  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.3  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   9.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.6  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 654 CPFFGFFMRINGPCLFFPFW 595
           C + G F+ INGPC  +  W
Sbjct: 239 CMYRGNFVTINGPCTTYMHW 258


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 401 PEKNQQANGLTGVIHQGNNGVMPQGTVPTAS 493
           P    Q   +TG    G NG  P  T PT S
Sbjct: 519 PNPTNQKVSITGAAADGPNGSAPVDTTPTNS 549


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 402 GFKRSRSTTFKMFRVLRLVCEKTMSFG 322
           GF  S  TTFK+F +L  +C + +  G
Sbjct: 83  GFPASPETTFKVFSLLDSLCLRLIQSG 109


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 304 QYTNPNTKRHGFFANESQDSKHFESSRPRSFKARK 408
           +Y NPN  R  F  N+     +F     R F  RK
Sbjct: 297 KYANPNLNRPPFLHNDQISDDYFPEIFKRHFLNRK 331


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 232 SSINSIQKVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFES 378
           SS N + K  +++  P   D   +Q   P+T R   +A+ + +  +F+S
Sbjct: 109 SSANYMTKSERQMRPPKSYDFPPSQQVRPSTSRSPSYASYNSEEVNFQS 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,744
Number of Sequences: 5004
Number of extensions: 50805
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)