Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060862.seq
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0044 + 18570501-18570654,18571384-18572435                       30   1.9  
07_03_0501 - 18820554-18821548,18821960-18822182                       30   1.9  
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459...    28   5.7  
03_04_0179 + 18161696-18163361,18163552-18163664                       28   7.5  
02_01_0116 + 862401-862734,862823-863078,863177-863311,863395-86...    27   9.9  

>11_05_0044 + 18570501-18570654,18571384-18572435
          Length = 401

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 222 AQEEFNQFYTKGCSKDHLPESERRYRNSIHQSKHQKTWFF 341
           AQEEF  +Y +    DHLP+ + + +    +S  +K  F+
Sbjct: 24  AQEEFVDWYFRVTQSDHLPDLKAKMKRMCDKSAIKKRHFY 63


>07_03_0501 - 18820554-18821548,18821960-18822182
          Length = 405

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 225 QEEFNQFYTKGCSKDHLPESERRYRNSIHQSKHQKTWFF 341
           Q+E+  FY +    +HLPE + + R   ++S  +K + F
Sbjct: 48  QDEYADFYFRVTKSEHLPELKNKLRRICNKSGIEKRFMF 86


>06_03_1034 -
           27044892-27044983,27045189-27045216,27045514-27045908,
           27046224-27046312,27046352-27046620,27047037-27047270
          Length = 368

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 192 GA*RVNISLGAQEEFNQFYTKGCSKDHLPESERRYRNSIHQSKH 323
           G+  + +S+     F   Y +    DHLPE ER   NS+    H
Sbjct: 121 GSRNIEVSIPTGTIFG-IYNRLAELDHLPEEERAQLNSLQSGTH 163


>03_04_0179 + 18161696-18163361,18163552-18163664
          Length = 592

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
 Frame = +2

Query: 209 HFFRSSRRVQSILYKRLLKRSPARVGATISELNTPIQTPKDMVFSQ-----TSLKTRNIL 373
           H  +SSR  + +     L  +  R+GA  S +      P+  +FS+       LK+R++L
Sbjct: 31  HLLKSSRLFRPVFLANCLAAAYCRLGAAPSAVAVLRHAPEPNIFSRNILLGAMLKSRDLL 90

Query: 374 KVVDLDRLKPEKNQQA--NGLTGVIHQGNN 457
               L    P+++  A  + ++G I  G N
Sbjct: 91  SARRLFDEMPDRDAVAYNSMMSGYIDGGRN 120


>02_01_0116 +
           862401-862734,862823-863078,863177-863311,863395-864721
          Length = 683

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 345 CEKTM-SFGVWIGVLSSDIVAPTRAGDLLSNLL 250
           C+  M +FG W+G+ S  +VA   AG +  ++L
Sbjct: 439 CKIAMFAFGSWVGIKSGGVVAALVAGGITMSIL 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,307,693
Number of Sequences: 37544
Number of extensions: 286251
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)