Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060862.seq
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_867| Best HMM Match : Leo1 (HMM E-Value=0) 32 0.47
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 29 3.3
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.3
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 29 4.4
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43) 29 4.4
SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7) 29 4.4
SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_35673| Best HMM Match : Ribosomal_L32p (HMM E-Value=8.4) 28 5.8
SB_29465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
Length = 591
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 550 SNSEFFQELXQLCSDPEREEQTRTIDSHKETEKR 651
S+++ F E +L SD E+E+ R ++S +ET+ R
Sbjct: 265 SHADLFGEDEELSSDEEKEDNAREVESKEETQAR 298
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/103 (23%), Positives = 43/103 (41%)
Frame = +1
Query: 232 SSINSIQKVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKE 411
S NS++ ++ T P RS + ++ P+T D + FES R
Sbjct: 1057 SGSNSVEAPRKRATLPRRSSPVISRKPRPDT-----LMRSKSDFERFESHRVTEDSRTSS 1111
Query: 412 PTGERSNRSDSPRKQXXXXXXXXXXXQLFRGILKPEQLYASTM 540
P E S R +SPR+ ++ R +K ++ + S++
Sbjct: 1112 PDAEYSPR-ESPRESLQQRTPRRSHSEVSRLPVKADRQHYSSL 1153
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 280 SRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKAR------KEPTGERSNRSD 441
S++DDI N ++++ F N+ DS++ + SF A K PT S S
Sbjct: 85 SQNDDISENNDNDDSQKDDDFPNDDDDSRNSDVDSRNSFDASRSEDACKNPTKVSSQDSR 144
Query: 442 SP 447
SP
Sbjct: 145 SP 146
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 476 TVPTASFSEEY*NRNSYTRAQCFTVRTQSSSKNWXSCAPIQK--GKNKHGPLILIKKPK 646
++PT S +RNS TR Q + R QSSS S ++ GK H LI K K
Sbjct: 817 SLPTRDQSSSTRDRNSSTRDQSSSTRDQSSSTRDQSSITTEQSSGKVNHAKLITDVKIK 875
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 228 EEFNQFYTKGCSKDHLPESERRYRNSIHQSKHQK 329
EE N+ S+D + ERR RN IH K QK
Sbjct: 132 EEENRRQLVEKSRDETGDFERRLRNEIHDLKEQK 165
>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
Length = 1176
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 241 NSIQKVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPR 390
+S+Q+ A S D G Y NP+ H + Q+ KH+E+ R +
Sbjct: 500 DSLQQGAPSQILASVELDEGKIYLNPSDPTHDVLGSLEQEVKHYENVRKK 549
>SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)
Length = 373
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 438 TPVRPFACWFFSGFKRSRSTTFKMFRVLR 352
TP P CW ++ K +R TT ++ ++ +
Sbjct: 129 TPTGPHCCWHYTSTKTTRETTTRLVQMCK 157
>SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 526 YASTMLHGSNSEFFQELXQLCSDPEREEQTR---TIDSHKETEKRA 654
+ TM S SE QEL +L DPE +E T +ID+ K + A
Sbjct: 54 HVKTMAEESMSEASQELKELKGDPESQEPTNCAISIDTGKVLDVEA 99
>SB_35673| Best HMM Match : Ribosomal_L32p (HMM E-Value=8.4)
Length = 207
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 498 PRNIETGTVI-REHNASRFELRVLPRTGSVVLRSRKGRTNT 617
P+N +T T + R HN+S + RTG + R G TNT
Sbjct: 44 PKNKKTNTTLTRAHNSSNLAIGTCTRTGQYIRPLRLG-TNT 83
>SB_29465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 180 VSCLGA*RVNISLGAQEEF-NQFYTKGC 260
+SCL A R+NI + F N F TKGC
Sbjct: 45 LSCLMADRLNIYINTNSAFENYFVTKGC 72
>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 213 SLGAQEEFNQFYTKGCSKDHLPESERRYRNSIHQSKHQKTW 335
++ AQ EF + ++ + +S +RY+ ++ ++KH W
Sbjct: 308 AMEAQAEFTKLLEDAIIENDIAQSVQRYQLAVQEAKHDCRW 348
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,705
Number of Sequences: 59808
Number of extensions: 368777
Number of successful extensions: 1823
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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