Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060862.seq
         (658 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF588503-1|ABQ96738.1|  169|Anopheles gambiae transposase protein.     25   2.8  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   3.7  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   6.4  
EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       23   8.5  

>EF588503-1|ABQ96738.1|  169|Anopheles gambiae transposase protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 360 VLRLVCEKTMSFGVWIGVLSSDIVAPTRAGDLLSNLL 250
           +L L+C++ + F + +  L+ + + PTR    LSN L
Sbjct: 112 LLDLICKECLPFNLVVYTLNPNYIMPTRKS--LSNAL 146


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/70 (20%), Positives = 32/70 (45%)
 Frame = +2

Query: 218  RSSRRVQSILYKRLLKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRL 397
            +++RR+ S+L +   +       A  ++ +     P+DM  ++  L  R  ++     R 
Sbjct: 1004 QAARRILSVLQEDWREEQQTLAAAEAAQPDPASSLPEDMAEAERRLLRRREVRNRSAQRR 1063

Query: 398  KPEKNQQANG 427
            + ++ QQ  G
Sbjct: 1064 RQQQRQQRLG 1073


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 107  HGITSNSSFERLAY-IHCTQ 163
            H IT+N+S  RL Y I C+Q
Sbjct: 3001 HNITNNNSVMRLEYCIDCSQ 3020


>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 92  FLFYNHGITSNSSFERLAYIHCTQAY 169
           F FYN+ ++  S FE   Y H    Y
Sbjct: 436 FGFYNYPVSFESMFESNRYEHYMNIY 461


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,705
Number of Sequences: 2352
Number of extensions: 11652
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)