Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060862.seq
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical pr...    30   1.3  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        30   1.7  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    30   1.7  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical...    28   6.7  
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical
           protein R04F11.3 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 352 SQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 453
           SQDS  F SSR +S +  K P  +R   +D  +K
Sbjct: 245 SQDSDEFPSSREQSVEKEKSPPAKRKRVNDENKK 278


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 260  LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 430
            L +S  R+G ++++L T +   + + FSQ  L +  ++K +D   +  +K   A  L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
            protein Y71G12B.11a protein.
          Length = 2553

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 260  LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 430
            L +S  R+G ++++L T +   + + FSQ  L +  ++K +D   +  +K   A  L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 392 RLKPEKNQQANGLTGVIHQGNNGVMP 469
           +L+ ++ QQ   L G++  GNNG+MP
Sbjct: 653 QLQQQQQQQQQQLQGMMMMGNNGMMP 678


>AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical
           protein T15B7.15 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 553 NSEFFQELXQLCSDPE-REEQTR--TIDSHKETEKR 651
           NS+  Q++  L  D   RE+QTR  TIDSHK   K+
Sbjct: 295 NSDKCQKMTSLLEDQLLREQQTRKATIDSHKAQNKK 330


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y113G7B.12 protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
 Frame = +1

Query: 235 SINSIQKVAQKITCPSRSDDIGTQYTN------PNTKRHGFFANESQDSKHFESSRPRSF 396
           S+N IQK    I   S +DD   + TN      P++    F  N+++ SK  ++   +  
Sbjct: 75  SVNEIQKGVSGIKISSDTDDRSQKKTNVDKVAPPHSSTKQFGTNQNKTSKSDQNKTSKRK 134

Query: 397 KARKEPTGERSNRSDSPRK 453
            +      E  NR +  R+
Sbjct: 135 SSAHTDEKESENREEWSRR 153


>AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical
           protein K03H6.5 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 405 SGFKRSRSTTFKMFRVLRLVCEKTMSFGVWIGVLSSDIVAPTRAGDLLSN 256
           S F RS+S   +   ++   C +  +F     V SS +VAP  A  L+SN
Sbjct: 365 SNFTRSKSVITQKTSIVYSPCSR--NFSTSRKVSSSSVVAPKGASQLISN 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,739
Number of Sequences: 27780
Number of extensions: 279778
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)