Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060862.seq
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.1  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   4.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 236 QSILYKRLLKRSPARV--GATISELNTPIQTPKDMVFSQTSLKTRNILKVVD 385
           Q  + K++LKRS      GA+  +       PK+ V +   LK+  + KVVD
Sbjct: 3   QPNICKQILKRSAESEFEGASSPKKRNKNPQPKNAVCALNELKSGAVYKVVD 54


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 538 MLHGS-NSEFFQELXQLCSDPEREEQTRTIDSHKE 639
           +L G+ N++ FQ   +L + P+R      I+ H++
Sbjct: 65  LLQGNINNQLFQTPCELLNFPKRSFSENMINDHRQ 99


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 139 ACIHSLYSGLLSGQLVV 189
           A I+ LY GLLSG +++
Sbjct: 124 AYIYHLYMGLLSGGIIL 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,767
Number of Sequences: 438
Number of extensions: 2959
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)