Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060862.seq
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16680.1 68418.m01951 PHD finger family protein contains Pfam...    32   0.29 
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...    30   1.2  
At2g24370.1 68415.m02912 protein kinase family protein contains ...    29   3.6  
At1g79200.1 68414.m09234 expressed protein                             28   6.3  
At5g04360.1 68418.m00428 pullulanase, putative / starch debranch...    27   8.3  
At4g31110.1 68417.m04415 wall-associated kinase, putative simila...    27   8.3  
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont...    27   8.3  

>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 1290

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 280 SRSDDIGTQ-YTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 453
           SR D++  +   NP++      ++E  + K  E SRP   K R+EP+ E S RS   RK
Sbjct: 197 SRKDEVKLESLQNPSSNHDDRVSSEKGNFK--EKSRPGGNKERQEPSVEGSTRSGENRK 253


>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 314 IQTPKD-MVFSQTSLKTRNILKVVDLDRLKPEKNQQAN 424
           +  P+D ++FS+ S K R+   + D +RL+PE+  Q N
Sbjct: 388 VANPQDILIFSKASKKGRSEANIDDSERLRPEELNQQN 425


>At2g24370.1 68415.m02912 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 816

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 508 LKPEQLYASTMLHGSNSEFFQELXQLCSDPE 600
           L+P  L  S  LH S+++  Q+   +C DPE
Sbjct: 55  LRPSPLNNSASLHASSAKLSQDSSLVCRDPE 85


>At1g79200.1 68414.m09234 expressed protein
          Length = 159

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 280 SRSDDIGTQYTNPNTKRH-GFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRKQ 456
           +RS+D  +       KRH G   ++ + S+  +    +S K  K  T ++S + D P+K+
Sbjct: 15  ARSEDSSSSDYEEKVKRHRGTEKDDERRSRRSDKKDKKSHKHHKSSTSKKS-KDDKPKKK 73


>At5g04360.1 68418.m00428 pullulanase, putative / starch debranching
           enzyme, putative similar to pullulanase [Spinacia
           oleracea] GI:634093 (EC 3.2.1.41); contains Pfam
           profiles PF00128: Alpha amylase catalytic domain,
           PF02922: Isoamylase N-terminal domain
          Length = 965

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
 Frame = +2

Query: 512 NRNSYTRAQCFTVRTQS-SSKNWXSCAPIQKGKNKHG-PLILIK------KPKNGHV 658
           +R+SY     F     S SS NW    P  KGKN+H  PLI  +      KPK+ H+
Sbjct: 775 DRDSYNSGDWFNRLDFSYSSNNWGVGLP-PKGKNEHNWPLIKPRLQDPSFKPKSSHI 830


>At4g31110.1 68417.m04415 wall-associated kinase, putative similar
           to wall-associated kinase 1, Arabidopsis thaliana,
           gb:AJ009696
          Length = 756

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 559 EFFQELXQLCSDPEREEQTRTIDSHKETEK 648
           E F EL ++C+ PE  +    ID  +E E+
Sbjct: 683 EVFTELERICTSPEDSQVHNRIDEEEEEEE 712


>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor (Dentin phosphophoryn DPP,
           Dentin sialoprotein DSP) [Homo sapiens]
          Length = 792

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 346 NESQDSKHFESSR--PRSFKARKEPTGERSNRSDS 444
           NE++D+KH ES++    S K  KE T E + + ++
Sbjct: 193 NETEDAKHSESAQVPEESTKLSKEETDEENQKEEN 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,178
Number of Sequences: 28952
Number of extensions: 255141
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)