Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060859.seq
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.1  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   9.6  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   9.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 143  TGLFLTIYYTANIEIAFYRVNYICRNVNY 229
            TG    +YY    E+ FY  N+   ++NY
Sbjct: 1600 TGHVAPLYYHPEDEVVFYNANF---SINY 1625


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 456 CNPLFRNYISKLNLRGIC 509
           CNP++  Y  K    G+C
Sbjct: 566 CNPIYDAYCQKHYANGLC 583


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 465 LFRNYISKLNLRGICVDNATLTR 533
           LF NY+  L  +G C + A + R
Sbjct: 39  LFDNYLQCLLKKGKCNEEAAILR 61


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 465 LFRNYISKLNLRGICVDNATLTR 533
           LF NY+  L  +G C + A + R
Sbjct: 39  LFDNYLQCLLKKGKCNEEAAILR 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,169
Number of Sequences: 336
Number of extensions: 2992
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)