Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060859.seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         46   3e-05
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               32   0.38 
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         30   2.0  
SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         28   8.3  

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 256 NGASFFFICIYLHIGRGIYYKSFN 327
           NGAS FFIC+Y HIGRG+YY S++
Sbjct: 33  NGASMFFICLYAHIGRGLYYGSYS 56



 Score = 35.1 bits (77), Expect = 0.054
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 161 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHVMELH-FFLFAFIYI 295
           ++Y A++ +AF  V++I R+VNYG ++R  H      FF+  + +I
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMFFICLYAHI 46


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 394 YVLP*GQISFWGATVITNLLSAIPYLGTILV 486
           Y LP  QI +W   ++T +  AIP +G+ LV
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLV 94


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 387  HRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLRGICVDNAT 524
            H +C+T R + F      Y  + C  +  + +S   L G+CV  ++
Sbjct: 931  HGICMTRRGDPFCVCTEGYTGLRCKVVINHCLSNPCLNGVCVSTSS 976


>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 268 MKLHYM*CSNYSTIVYISANIIYSIKSYFNI 176
           + L+Y     YS  VY S N+ YSI  Y+++
Sbjct: 6   VNLYYFVNVYYSIDVYYSVNVYYSINVYYSV 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,543
Number of Sequences: 59808
Number of extensions: 291862
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)