Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060858.seq
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   155   4e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   155   4e-40

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  155 bits (376), Expect = 4e-40
 Identities = 70/94 (74%), Positives = 81/94 (86%)
 Frame = +1

Query: 256 GISAAVSKTAVAPIERXKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
           G++AA+SKT VAPIER KLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 436 ANVIRYFPTQALNFAFKDKYKQVFPAVLTRRRSF 537
           ANVIRYFPTQALNFAFKDKYKQVF   + +   F
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 56.4 bits (130), Expect = 2e-10
 Identities = 27/43 (62%), Positives = 28/43 (65%)
 Frame = +2

Query: 542 RYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAAXVGKGDGQRE 670
           RYF            TSLCFVYPLDFARTRLAA VGK  G+RE
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGERE 155



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 206 MSNLADPVAFAKDFLA 253
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16



 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 301 RXKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 450
           R ++++Q      +I     YK  +  +  I K +G  +F++G F+N++R
Sbjct: 237 RRRMMMQSGRAKSEIL----YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 25.8 bits (54), Expect = 0.38
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +1

Query: 256 GISAAVSKTAVAPIERXKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
           G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG  
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 436 ANVIRYFPTQALNFAFKDKYKQVFP 510
            +V      +A  F F D  + + P
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLP 205


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  155 bits (376), Expect = 4e-40
 Identities = 70/94 (74%), Positives = 81/94 (86%)
 Frame = +1

Query: 256 GISAAVSKTAVAPIERXKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
           G++AA+SKT VAPIER KLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 436 ANVIRYFPTQALNFAFKDKYKQVFPAVLTRRRSF 537
           ANVIRYFPTQALNFAFKDKYKQVF   + +   F
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 56.4 bits (130), Expect = 2e-10
 Identities = 27/43 (62%), Positives = 28/43 (65%)
 Frame = +2

Query: 542 RYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAAXVGKGDGQRE 670
           RYF            TSLCFVYPLDFARTRLAA VGK  G+RE
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGERE 155



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 206 MSNLADPVAFAKDFLA 253
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16



 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 301 RXKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 450
           R ++++Q      +I     YK  +  +  I K +G  +F++G F+N++R
Sbjct: 237 RRRMMMQSGRAKSEIL----YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 25.8 bits (54), Expect = 0.38
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +1

Query: 256 GISAAVSKTAVAPIERXKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
           G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG  
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 436 ANVIRYFPTQALNFAFKDKYKQVFP 510
            +V      +A  F F D  + + P
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLP 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,253
Number of Sequences: 438
Number of extensions: 3257
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)