Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060857.seq
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0LP70 Cluster: Acyltransferase 3; n=1; Syntrophobacter...    35   1.6  
UniRef50_Q2JU59 Cluster: ISSoc4, transposase orfAB; n=18; Synech...    35   2.2  
UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_Q88WJ7 Cluster: UPF0122 protein lp_1634; n=43; Bacilli|...    33   5.0  
UniRef50_A5N294 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  

>UniRef50_A0LP70 Cluster: Acyltransferase 3; n=1; Syntrophobacter
           fumaroxidans MPOB|Rep: Acyltransferase 3 -
           Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
          Length = 382

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 18  QNCYFYLIPSIFIFLSTFEAFSGLPQ-EQSFSETNEQQFIFIYID*CSVISLLSKYMISY 194
           +  ++YL+P+ + F    + +   P   +   +  E +F+ +    C V +LLS+Y++S 
Sbjct: 162 ETVFYYLVPAWWFFGLLLQLYLFFPLFSRLLDKAGEVKFLIL----CGVFTLLSRYLLSE 217

Query: 195 VLFSNFRYA 221
           VL +N  YA
Sbjct: 218 VLEANGNYA 226


>UniRef50_Q2JU59 Cluster: ISSoc4, transposase orfAB; n=18;
           Synechococcus|Rep: ISSoc4, transposase orfAB -
           Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria
           bacteriumYellowstone A-Prime)
          Length = 315

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 270 IEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQ 377
           + AY+ GN S+ ++AK+F ++K  +HR V +  ++Q
Sbjct: 13  VAAYQAGNTSIRQVAKRFMVTKRTVHRWVRQYQQTQ 48


>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 18  QNCYFYLIPSIFIFL 62
           QNCYFYLIP IFIF+
Sbjct: 63  QNCYFYLIPRIFIFI 77


>UniRef50_Q88WJ7 Cluster: UPF0122 protein lp_1634; n=43;
           Bacilli|Rep: UPF0122 protein lp_1634 - Lactobacillus
           plantarum
          Length = 115

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +3

Query: 270 IEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKKRIH 401
           I+ Y   + SL EIA +F++S+  ++ ++ RT K   G++ ++H
Sbjct: 28  IQLYYADDYSLGEIAAEFSVSRQAVYDNIKRTEKILEGYEAKLH 71


>UniRef50_A5N294 Cluster: Putative uncharacterized protein; n=1;
           Clostridium kluyveri DSM 555|Rep: Putative
           uncharacterized protein - Clostridium kluyveri DSM 555
          Length = 106

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -2

Query: 368 HCSCYMSVQNRLTYIKLLSYFN*RPIPNFIGFYCYTSL*GFALFDTQTLGISKIRK*Y 195
           +C   +S+  +L+Y    SYF   P+ N    YC     GFALFDT +L   +  + Y
Sbjct: 15  NCGLILSICGKLSYCGF-SYFTSLPVKNDPKRYCSR---GFALFDTTSLSFKEYARNY 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,846,749
Number of Sequences: 1657284
Number of extensions: 9853088
Number of successful extensions: 19169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19164
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)