Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060857.seq
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480     28   8.0  
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194...    28   8.0  
01_01_1026 - 8124929-8125120,8125294-8125344,8125610-8125743,812...    28   8.0  

>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
          Length = 910

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 367 IVLVTCLCKTDLLILNCLAISTKDLFP 287
           I LV  LC++ L +LNC +++T   FP
Sbjct: 784 IRLVLRLCRSSLKLLNCPSLATVSQFP 810


>02_05_0007 +
           24918163-24918420,24919360-24919410,24919411-24919480,
           24919645-24919830,24920127-24920275,24921310-24921417,
           24921501-24921638,24922574-24922853,24922924-24923047,
           24923197-24923312,24923612-24923619
          Length = 495

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 434 PHTEQILIYLIMYSFFVSTLGFHCSCYMSVQNRLTYIKLLSYF 306
           PH + ++  L     F+   G++ SC+ S  +   ++KL SYF
Sbjct: 293 PHDQSVVKILFSLPLFMLICGYYGSCFQS--HNGAHLKLPSYF 333


>01_01_1026 -
           8124929-8125120,8125294-8125344,8125610-8125743,
           8125842-8126096,8126175-8126513,8126607-8126748,
           8127068-8127199
          Length = 414

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/37 (35%), Positives = 26/37 (70%)
 Frame = +3

Query: 132 IFIYID*CSVISLLSKYMISYVLFSNFRYA*RLRIKE 242
           + +YI  CS++ ++SK +IS++L+   ++A + RI E
Sbjct: 53  VALYITICSILFIVSKMLISFLLYK--KWARKKRIIE 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,521,257
Number of Sequences: 37544
Number of extensions: 237840
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)