Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060857.seq
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical...    33   0.19 
Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical p...    33   0.25 
U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical...    29   3.1  
Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p...    27   9.6  
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ...    27   9.6  

>AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical
           protein Y45F10B.6 protein.
          Length = 324

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 33  YLIPSIFIFLSTFEAFSGLPQEQSFSETNEQQFIFIYI-D*CSVISLLSKYMISYVLFS 206
           YL+P++FI    F+ F G   E+     N   F+ I +    S++ ++S Y+   + F+
Sbjct: 36  YLVPTVFIIFKVFKVFWGSLFEKRMESLNPHVFLVIVVSQLTSILYMISDYLTIRIPFT 94


>Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical
           protein C33A12.14 protein.
          Length = 329

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +3

Query: 27  YFYLIPSIFIFLSTFEAFSGLPQEQSFSETNEQQFIFIYID*CSVISLLSKYMISYVL 200
           +FY+IP+I++ L  F  +  L  +    E  + Q++F+ I   + IS  S ++ +Y++
Sbjct: 33  WFYMIPTIYVTLKIFLVY--LTNDWDTVEPGKNQYVFLVIS-LTQISCFSYFLFNYLI 87


>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 388 LCPPWDFIVLVTCLCKTDLLILNCLAIST 302
           + PP  FI+L+ C+  +  L++ C  IST
Sbjct: 5   IVPPTRFIILIACILASIQLLVQCSPIST 33


>AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical
           protein Y45F10B.5 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 33  YLIPSIFIFLSTFEA-FSGLPQEQSFSETNEQQFIFIYID*CSVISLLSKYM 185
           YL+P++FI L  F+  F  L  +Q  +      F+ +     S+  +LS Y+
Sbjct: 36  YLVPTVFIILKVFKCYFRNLVGKQEATMNPHVFFVIVTAQLTSIFFMLSDYI 87


>Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical
           protein F54F7.4 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 20  KLLFLFNSEHFHIFIYL*SLLWTSTRTEF 106
           K+L+L    HFH F+    ++W +  TEF
Sbjct: 5   KILYLKFQNHFHRFVVYFFIVWKTVFTEF 33


>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 325 LNCLAISTKDLFPIS*ASIAIHLFKALHSLIRKR*AYL 212
           LNCL +  +  + +S A +A H   ALH +  +  A++
Sbjct: 551 LNCLQLPAQARYVLSFARLAAHFTSALHDMCPEEKAFI 588


>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 325 LNCLAISTKDLFPIS*ASIAIHLFKALHSLIRKR*AYL 212
           LNCL +  +  + +S A +A H   ALH +  +  A++
Sbjct: 551 LNCLQLPAQARYVLSFARLAAHFTSALHDMCPEEKAFI 588


>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
           protein.
          Length = 1141

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 325 LNCLAISTKDLFPIS*ASIAIHLFKALHSLIRKR*AYL 212
           LNCL +  +  + +S A +A H   ALH +  +  A++
Sbjct: 551 LNCLQLPAQARYVLSFARLAAHFTSALHDMCPEEKAFI 588


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,482,894
Number of Sequences: 27780
Number of extensions: 248445
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)