Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060857.seq
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    29   3.8  
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident...    28   6.7  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    27   8.9  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    27   8.9  

>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 400 CILFLCPPWDFIVLVTCL 347
           C L++CPP DF++  +C+
Sbjct: 294 CPLYMCPPCDFVIHKSCI 311


>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
           identical to F-box protein family, AtFBL4 (GP:21536497)
           [Arabidopsis thaliana]; similar to grr1 GI:2407790 from
           [Glycine max]
          Length = 610

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 KECKALKRCIAIEAYEIGNRSLVEIAK 317
           K C+ LK+      YEIGN+ ++ I K
Sbjct: 421 KGCRNLKKLHIRRCYEIGNKGIISIGK 447


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 400 CILFLCPPWDFIVLVTCL 347
           C  ++CPP DF+V   CL
Sbjct: 537 CPFYICPPCDFVVHQKCL 554


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 400 CILFLCPPWDFIVLVTCL 347
           C  ++CPP DF+V   CL
Sbjct: 344 CPFYICPPCDFVVHQKCL 361


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,931
Number of Sequences: 28952
Number of extensions: 216263
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)