Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060856.seq
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.99 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.2  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 598 YDACDDHVPNLKQNP 554
           +  C DHVP +  NP
Sbjct: 700 FPTCGDHVPEINSNP 714


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 506 FALYDLCAHNLCAPAVMPSP--DITYNI 429
           F L D   H+L +P+  P+P  D T N+
Sbjct: 261 FTLVDASQHDLGSPSSGPAPPGDFTENM 288


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 574 ARDHRMHHKYSETDADPHNATRGFFFSHIGW 666
           +R+H    + +ET A   N T  F+ S  GW
Sbjct: 190 SRNHLFLVRRTETLAQILNQTVNFYNSAFGW 220


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 616 HQSRSIYDACDDHVPNLKQN 557
           HQ++ +YD+C      + QN
Sbjct: 129 HQTQVVYDSCKLQAAAVTQN 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,283
Number of Sequences: 336
Number of extensions: 4110
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)