Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060856.seq
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 116 3e-27
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.5
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 3.3
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 26 4.3
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 26 4.3
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.5
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 25 9.9
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.9
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.9
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 116 bits (279), Expect = 3e-27
Identities = 53/121 (43%), Positives = 80/121 (66%)
Frame = +1
Query: 307 NYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWA 486
N+ + L W + +L L + A+YG +F + +T +FA I Y SGLGITAG HRLW+
Sbjct: 57 NWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWS 114
Query: 487 HKSYKAKCLYVLSLSSSIPWAFQDSALDWARDHRMHHKYSETDADPHNATRGFFFSHIGW 666
H++YKAK L++ AF+ S W+RDHR HH+Y++TD DP+N +GF+++H+GW
Sbjct: 115 HRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGW 174
Query: 667 L 669
+
Sbjct: 175 M 175
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 310 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVM 444
Y KKL W I+ F Y H + Y+ L H ++F+ Y++
Sbjct: 440 YTKKL-WSLIVNFEYTHAPLIPDAYMKLLHLYEFPNIFSKYDYIL 483
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 261 YSRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVWRLPF 389
YSRL H C SR++ ET+ ++ N C+ + L +
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDY 371
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +1
Query: 223 KGCKWCSL*KCADTPDLGLSSTPVQQADNYPKKLVWRN 336
K W C + + +S P+++ Y + VW+N
Sbjct: 279 KRSAWEDFLDCGNYKPVNISVAPIEEQGEYESRRVWKN 316
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 652 RKRNLVWHYVGRHQSRSIYDACDDHVPNLKQNPEKPK 542
+K+N+ H VGR +S +A H P P+ PK
Sbjct: 80 KKKNIHGHRVGRVESDKTKEAERQHKPRKPFIPKNPK 116
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +1
Query: 283 STPVQQADNYPKK--LVWRNIIL---FTYLHIAALYGGYLFLFHAKWQTDLF 423
S+P Q ++ K +VW ++++ F+Y+ AA Y + L+ W+ L+
Sbjct: 64 SSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLY 115
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 352 YLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAH 489
Y+ +A L ++ LF T L IL +++ LGI A + +AH
Sbjct: 514 YILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAH 559
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 280 TVLSLEYQHIFKEN-TICILYIGRHIGLLFHAIPVAIY*PFKKNTL 146
+V+ EY I N TI IL +G+L+H I A P+ + L
Sbjct: 959 SVVYEEYHPILHSNITIPILQSDSFVGILWHTIVYAYIYPYDQGKL 1004
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 62 RLIINNTIFTYLASVLLFTNRRIDVICE*CIFFKRLINSYWY 187
R + N FT + L F N+ + VI C+F + SY++
Sbjct: 663 RKYLANKYFTSNFAPLKFDNQALSVIIWVCVFTCKFAESYFF 704
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = -2
Query: 532 MIRITRRGTLLCMIYVPIIYVHLL*CQVLTLHTIYRQIGLFAISHEIRKGSLHTTQQYEG 353
++ +T TL C + V LL + T + + I I E + S HT + Y
Sbjct: 130 LVPLTFGVTLACSFELSADIVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNK 189
Query: 352 M*KVLYSS 329
+ +LYSS
Sbjct: 190 LNLLLYSS 197
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 469 AHRLWAHKSYKAKCLYVLSLSSS--IPWAFQDSAL 567
A +L+ H S K CLYV + SSS + QD+A+
Sbjct: 463 AVQLFYHISKKVNCLYVEAFSSSDAVLQRIQDNAV 497
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = -2
Query: 568 LKQNPEKPKELKMIRITRRGTLLCMIYVPIIYVH 467
L ++PE K++ ++ +R +L M ++ +++H
Sbjct: 48 LNESPELVKKISLVSKSRVNRILAMPFLGAVFIH 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,707
Number of Sequences: 5004
Number of extensions: 65772
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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