Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060856.seq
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0597 + 4880134-4880191,4880761-4880994,4881150-4881208,488...    29   3.4  
12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258...    28   7.8  
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615...    28   7.8  
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    28   7.8  

>12_01_0597 +
           4880134-4880191,4880761-4880994,4881150-4881208,
           4883125-4883562
          Length = 262

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +1

Query: 313 PKKLVWRNIILFTYLHIAAL---YGGYLFLFHAK--WQTDLFAYILYVMSGLGITAGAHR 477
           P KLV R II+     +A L   +   L L  A   W   ++  +   ++ LGI  G  R
Sbjct: 163 PLKLVLRTIIIMFTTLVAMLLPFFNAVLGLIGALGFWPLSVYFPVSMHVARLGIRRGEPR 222

Query: 478 LWAHKSYKAKCLYVLSLSSSI 540
            W+ ++    CL ++S+++SI
Sbjct: 223 WWSLQAMSFVCL-LISIAASI 242


>12_01_0335 -
           2583476-2583493,2583919-2583965,2584151-2584274,
           2584421-2584665,2585281-2585404,2585424-2585456
          Length = 196

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 670 EASQCERKRNLVWHYVGRHQSR 605
           EASQC+  R +  H  GRH SR
Sbjct: 120 EASQCDDPRYIPKHKFGRHMSR 141


>02_03_0212 -
           16460665-16460766,16460971-16461298,16461379-16461502,
           16461576-16461825,16462185-16462265,16463030-16463114,
           16463200-16463321,16463865-16464672,16464775-16465027,
           16465998-16466796
          Length = 983

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 278 SPKSGVSAHFQREHHLHPLHWAPYWS 201
           SP S  S+     HHLHP H  P +S
Sbjct: 64  SPSSSASSSSGSLHHLHPTHSLPAFS 89


>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 268 DLGLSSTPVQQADNYPKKLVWRNII 342
           D  +   PV + DN+  K++WRNI+
Sbjct: 823 DAMMKRPPVGRGDNFITKVMWRNIV 847


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,990,219
Number of Sequences: 37544
Number of extensions: 378411
Number of successful extensions: 871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)