Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060856.seq
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0) 111 4e-25
SB_51727| Best HMM Match : RasGEF_N (HMM E-Value=7.8) 32 0.48
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22) 30 2.0
SB_8585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_43453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
Length = 268
Score = 111 bits (268), Expect = 4e-25
Identities = 47/79 (59%), Positives = 58/79 (73%)
Frame = +1
Query: 433 LYVMSGLGITAGAHRLWAHKSYKAKCLYVLSLSSSIPWAFQDSALDWARDHRMHHKYSET 612
L + G G+T GAHRLWAH+++KAK L + A Q+ +W+RDHR+HHKYSET
Sbjct: 12 LSLCRGYGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSET 71
Query: 613 DADPHNATRGFFFSHIGWL 669
DADPHNA RGFFFSH+GWL
Sbjct: 72 DADPHNAKRGFFFSHVGWL 90
>SB_51727| Best HMM Match : RasGEF_N (HMM E-Value=7.8)
Length = 243
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 297 LYRCAGQS*VWSISTFSKRTPFASFTLGAI 208
+YRC+G + VW I + K PF + G I
Sbjct: 137 IYRCSGANSVWHIDGYDKLKPFGFYVSGCI 166
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 264 SRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVW---RLPFLISCEMANRPICLYI 434
S +R +Q +C++S Q + Y+ Y SY + L F+I CE + I L I
Sbjct: 1032 SVIRKLQSSCSSSEQRRSKRQ-RNYSVVYGVSYVLITILEINLNFIICCENETKVISLEI 1090
Query: 435 VC 440
VC
Sbjct: 1091 VC 1092
>SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)
Length = 432
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 251 FQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTIHKLHQ 129
F + +HP H+ P W + TSS L T ++Y I HQ
Sbjct: 89 FHQSGKIHPPHFPPVW----KDTSSALFTSLERYIIRTFHQ 125
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 251 FQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTIHKLHQF 126
F + +HP H+ P W + TS L T ++Y I HQF
Sbjct: 395 FHQSGKIHPPHFPPVW----KDTSPALSTSLERYIIRTFHQF 432
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 251 FQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTIHKLHQ 129
F + +HP H+ P W + TSS L T +Y I +HQ
Sbjct: 259 FHQSGKIHPPHFPPVW----KDTSSALSTSLARYIIRTVHQ 295
>SB_8585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 251 FQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTIHKLHQ 129
F + +HP H+ P W + TSS L T ++Y I HQ
Sbjct: 44 FHQSGKIHPPHFPPVW----KDTSSALSTSLERYIIRTFHQ 80
>SB_43453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 251 FQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTIHKLHQ 129
F + +HP H+ P W + TSS L T ++Y I HQ
Sbjct: 55 FHQSGKIHPPHFPPVW----KDTSSALSTSLERYIIRTFHQ 91
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 251 FQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTIHKLHQ 129
F + +HP H+ P W + TSS L T ++Y I HQ
Sbjct: 89 FHQSGKIHPPHFPPVW----KDTSSALSTSLERYIIRTFHQ 125
>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1766
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 251 FQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTIHKLHQ 129
F + +HP H+ P W + TSS L T ++Y I HQ
Sbjct: 1103 FHQSGKIHPPHFPPVW----KDTSSALSTSLERYIIRTFHQ 1139
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 460 TAGAHRLWAHKSYKAKCLYVLSLSSSIPWAFQDSALDWARDHR 588
T GA H+ Y+ K L + S+PW QD + + HR
Sbjct: 912 TIGASLAPCHEEYQEKTRNWLLEARSVPWCLQDGLYEPRQCHR 954
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,823,382
Number of Sequences: 59808
Number of extensions: 471802
Number of successful extensions: 889
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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