Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060856.seq
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 628 YVGRHQSRSIYDACDDHVPNLKQNPEKPKELKMIRITRRGTLLCMIYV 485
           +V  H+      A   +V +L+ N     +   IRI +    +C +YV
Sbjct: 237 HVVNHEKALREQAKKMNVDSLRSNANTSSQSAEIRIAKAAITICFLYV 284


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 290 LYSKPTTTQRN*FGGI*YFLHTFILL 367
           L+ +P++T+R     + + LH F LL
Sbjct: 265 LWLEPSSTERMIIANLNFILHLFCLL 290


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 232 CILYIGRHIGLL 197
           C L +GRH+G L
Sbjct: 216 CTLILGRHLGFL 227


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 324 SLEEYNTFYIPSYCC 368
           SL +YN   IP+ CC
Sbjct: 150 SLSDYNDKPIPASCC 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,562
Number of Sequences: 438
Number of extensions: 4311
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)