Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060852.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 120  KPVKCALRSRPPESAILTRIHSPEKIL 200
            + + C LR+  P   +L  +H+  ++L
Sbjct: 1102 RDLPCVLRASTPAPVVLEAVHASRRVL 1128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 213  GNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTS 103
            G   S +F +  +A+   +P   +L R SPAF G++S
Sbjct: 900  GEPTSAAFAQG-FATAASSPG--LLERASPAFSGTSS 933


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 463 FSQYTVVLEISLCKV 507
           + QY  VL +SLCK+
Sbjct: 102 WQQYPWVLGVSLCKI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,614
Number of Sequences: 438
Number of extensions: 3937
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)