Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060851.seq
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 8    RKNEVPFTQCVNKYININVVSGEHINS 88
            RK+ +      N+Y N NVV+  H NS
Sbjct: 1483 RKSHMQTLGAKNEYGNNNVVARNHRNS 1509


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 8    RKNEVPFTQCVNKYININVVSGEHINS 88
            RK+ +      N+Y N NVV+  H NS
Sbjct: 1483 RKSHMQTLGAKNEYGNNNVVARNHRNS 1509


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 8    RKNEVPFTQCVNKYININVVSGEHINS 88
            RK+ +      N+Y N NVV+  H NS
Sbjct: 1483 RKSHMQTLGAKNEYGNNNVVARNHRNS 1509


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 8    RKNEVPFTQCVNKYININVVSGEHINS 88
            RK+ +      N+Y N NVV+  H NS
Sbjct: 1483 RKSHMQTLGAKNEYGNNNVVARNHRNS 1509


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 348 DENNSDSGSKSNAP 389
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 348 DENNSDSGSKSNAP 389
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 348 DENNSDSGSKSNAP 389
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 348 DENNSDSGSKSNAP 389
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 348 DENNSDSGSKSNAP 389
           + NNS SG  SN P
Sbjct: 141 NNNNSKSGQSSNPP 154


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 348 DENNSDSGSKSNAP 389
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 348 DENNSDSGSKSNAP 389
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,238
Number of Sequences: 336
Number of extensions: 2700
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)