Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060851.seq
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    60   3e-10
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    35   0.008
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    32   0.076
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    27   2.9  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   3.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   6.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.6  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   6.6  
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    25   6.6  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   8.8  

>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 31/51 (60%), Positives = 35/51 (68%)
 Frame = +2

Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
           K++K C   C     EFIS VT EAS++C  EKRKTI GEDVL ALNT GF
Sbjct: 33  KEAKDCVQDCVS---EFISFVTGEASEQCTQEKRKTITGEDVLLALNTLGF 80



 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 22/33 (66%), Positives = 29/33 (87%)
 Frame = +3

Query: 411 LPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
           LPIAN+A+IMK A+PEN KI+K+A+ CVQ C+S
Sbjct: 12  LPIANVARIMKSALPENAKISKEAKDCVQDCVS 44


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +2

Query: 506 IEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
           +EFI  V+SEA++ C+ E +KTI  E ++ AL    F
Sbjct: 44  VEFIHLVSSEANEICEKEAKKTIAAEHIIKALENLEF 80


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = +3

Query: 135 SSLNTQFCKHYVTLSSKSSTHFFNKRELLLKVDTKISNHGSDELGNDLVRLDNGFLVADD 314
           S +N++  + YVT+ S  S+H    R     V    +N   DE   D + L N F  A D
Sbjct: 88  SHINSKTERGYVTVESDMSSHNTLDRNSKPTVSHSYTNSSKDEKFLDPIALQNLFSPASD 147

Query: 315 TFVVNSDD 338
           T   N  D
Sbjct: 148 THSQNIHD 155


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 291 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 404
           NG  V D T VV S    ED+ N ++    N P+   +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -3

Query: 375 YSQSPSCFHLLTHHQN*QQMCHPLPKIHCPISL 277
           Y   P C    TH  N       +P IH P+ L
Sbjct: 127 YDPRPGCLKFTTHEINVSYTDTSIPVIHIPVQL 159


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 600 NANNTSSPLMVLRFSTLHLSLASLVTXDMNS 508
           N+N+ SSP+ V R STL  + A+    +M S
Sbjct: 529 NSNSKSSPVAVQRVSTLPQASANKQAKEMES 559


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -3

Query: 414 VKIYPVLLAVHCSYSQSPSCFHLLTHHQN*QQMCHPLPKIHCPISLSHFQVRRFHD 247
           ++I+   +  HC + QS + FH  T  ++      PL  ++   ++S     R HD
Sbjct: 407 LRIHLAEVFFHCCHGQSYNLFHRPTFFESLNNNTVPLVVVYAVCAVSARFSSRMHD 462


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 276 LVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSK 377
           L    NG+ V +D F    +DV E+E + D+  K
Sbjct: 118 LAEQPNGYFVLNDIFRFLREDVEEEEESPDAVEK 151


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 324 VNSDDVLEDENNSDSGSKSNAPLREQDRFL 413
           V S  +L+ E+NS++  + + P  +QDR L
Sbjct: 31  VISSKILQFEDNSETSLRHDLPKYDQDRLL 60


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 288 DNGFLVADDTFVVNSDDVLEDENNS 362
           D   L ++D  V NSDD++ED +N+
Sbjct: 355 DGEDLESEDEEVDNSDDIVEDGDNA 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,821
Number of Sequences: 5004
Number of extensions: 46691
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)