Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060851.seq
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   2.3  
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            29   4.0  
SB_23611| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   7.0  
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9)                      27   9.2  

>SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 231 DTKISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 404
           D    N G D++ +D+V  D G +  DD   V  DD  +D+++ D     N    + D
Sbjct: 21  DNVDDNDGDDDVDDDVVYDDVGDIADDDNAFVVLDDDDDDDDDDDDDDDDNDDDNDDD 78


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/48 (20%), Positives = 30/48 (62%)
 Frame = +3

Query: 240  ISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSN 383
            I+N+ S+   N  +  +N  ++ +++ ++N++  + + NN+++ S +N
Sbjct: 1819 INNNSSNNNNNSSINNNNSSIINNNSSIINNNSSINNRNNTNNNSINN 1866


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 240  ISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQ 401
            ++   ++EL ND+V  ++  + A+D        + + EN  D+  K NA L++Q
Sbjct: 887  VAESKANELENDIVAANSDKVQAEDDLYAMQGKIGKLENQIDTLRKQNAQLKDQ 940


>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 327  NSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIP---ENGKIAKDARG 488
            NSDD+L DEN S S   S+A   E   ++ + N+ K+     P    + K  KD  G
Sbjct: 1169 NSDDLLGDENMSSSSLPSDAEFNEFHPWI-VDNVRKLPPPGSPPLLPDDKELKDIHG 1224


>SB_23611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 SDELGNDLVRLDNGFLVA-DDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFL 413
           SDE G D+ R D+      DD      +D  +DE + D GS +    R +  F+
Sbjct: 10  SDEEGEDITREDDDDEEEEDDDEDFEDEDDYDDEYDEDEGSSARRKRRRESGFI 63


>SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 231 DTKISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSN 383
           D    ++GSD  GND    D+G    DD    + +D + D N+ DSG  ++
Sbjct: 20  DNNDDDYGSDNNGNDNNDDDDGSNENDDD-GSDENDYVGDNNDYDSGDNND 69


>SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 264 LGNDLVRLD-NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFL 413
           +G+D V  D + F+V DD  V   D+V +D +N   G   N  + + D  +
Sbjct: 280 VGDDNVADDYDNFIVGDDDNVDGDDNVADDYDNFIVGDDDNVIVGDDDNVI 330


>SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 231 DTKISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSN 383
           D    ++GSD  GND    D+G    DD    + +D + D N+ DSG  ++
Sbjct: 20  DNNDDDYGSDNNGNDNNDDDDGSNENDDD-GSDENDYVGDNNDYDSGDNND 69


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +3

Query: 219  LLKVDTKISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDE-----NNSDSGSKSN 383
            LLK D + +     +L N+L+ L      A+     N +D L DE      +  S  K N
Sbjct: 3346 LLKDDNQHAEENKGQLSNELLSLQRKLADAEKKLRDNRNDALGDELETLKRDLSSSEKEN 3405

Query: 384  APLREQDRFL 413
              LR   R L
Sbjct: 3406 TDLRSTVRSL 3415


>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 213 ELLLKVDTKISNHGSDELGNDLVRLDNGFLVADDT 317
           E + +  T  S   SDELG  L+  D GFL+ + T
Sbjct: 451 ENITRFATWQSKEKSDELGEQLIMGDQGFLMGNQT 485


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +3

Query: 348  DENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCISNSY 518
            ++  S+ G KS+ P     + L + ++   +++ +PE  ++ K A   ++ C  NSY
Sbjct: 1598 EDKLSELGVKSSEPEDMDKQLLTLWDLKDGIEKHVPEFEELNKAAVSLIKKCPDNSY 1654


>SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9)
          Length = 564

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 231 DTKISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNA 386
           D K++    DE+  D    D+  + ADD  VVN+DD  +DE ++D   + +A
Sbjct: 167 DNKVNAADDDEMDAD----DDDEVDADDDDVVNADD--DDEMDADDDDEVDA 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,227
Number of Sequences: 59808
Number of extensions: 326081
Number of successful extensions: 1088
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)