Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060851.seq
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    52   4e-07
AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81546-4|CAB04453.1|  184|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    28   4.6  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      28   4.6  

>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = +3

Query: 390 LREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
           L +Q+RFLPIAN+ +IMK  +    K+AKDA+ C Q C+S
Sbjct: 59  LLDQERFLPIANVVRIMKTQMDPQAKLAKDAKECAQECVS 98



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +2

Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
           KD+K C   C     EFIS + SEA++ C + KRKTI  +D+L A+   GF
Sbjct: 87  KDAKECAQECVS---EFISFIASEAAEICNITKRKTITADDLLTAMEATGF 134


>AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14a protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 285 LDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 419
           L  GF VAD+ FV+N+ D +E ++ S    K+     +   FL +
Sbjct: 132 LSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLEL 176


>AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14b protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 285 LDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 419
           L  GF VAD+ FV+N+ D +E ++ S    K+     +   FL +
Sbjct: 173 LSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLEL 217


>Z81546-4|CAB04453.1|  184|Caenorhabditis elegans Hypothetical
           protein F53A2.5 protein.
          Length = 184

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 458 EWKDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
           E + +     M +   +EF+  +  EA      ++RKTI  E V  AL   GF
Sbjct: 37  EMRIANESRDMINACCVEFVKHIAREAQRIASQDQRKTIYHEHVQKALQNLGF 89


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 165 SVYKIVYSRMKEVPIFFESFVQIIKKELMCSPETTLIF 52
           S+Y+IV +R  ++   FES   ++   L C P    IF
Sbjct: 280 SIYEIVMTRAIQLDTKFESSAMVLLVHLCCKPHFMKIF 317


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 165 SVYKIVYSRMKEVPIFFESFVQIIKKELMCSPETTLIF 52
           S+Y+IV +R  ++   FES   ++   L C P    IF
Sbjct: 280 SIYEIVMTRAIQLDTKFESSAMVLLVHLCCKPHFMKIF 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,625
Number of Sequences: 27780
Number of extensions: 251093
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)