Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060851.seq
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14540.1 68417.m02240 CCAAT-box binding transcription factor ... 70 1e-12
At2g38880.3 68415.m04778 histone-like transcription factor (CBF/... 69 3e-12
At2g38880.2 68415.m04777 histone-like transcription factor (CBF/... 69 3e-12
At2g38880.1 68415.m04779 histone-like transcription factor (CBF/... 69 3e-12
At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,... 68 6e-12
At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,... 68 6e-12
At5g47640.1 68418.m05882 CCAAT-box binding transcription factor ... 66 2e-11
At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,... 66 2e-11
At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,... 62 2e-10
At5g47670.1 68418.m05885 CCAAT-box binding transcription factor ... 59 3e-09
At2g47810.1 68415.m05967 histone-like transcription factor (CBF/... 54 8e-08
At1g21970.1 68414.m02749 CCAAT-box binding transcription factor ... 51 7e-07
At1g09030.1 68414.m01007 histone-like transcription factor (CBF/... 50 1e-06
At5g23090.3 68418.m02701 TATA-binding protein-associated phospho... 38 0.004
At5g23090.2 68418.m02700 TATA-binding protein-associated phospho... 38 0.004
At5g23090.1 68418.m02699 TATA-binding protein-associated phospho... 38 0.004
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.11
At1g42990.1 68414.m04949 bZIP transcription factor family protei... 32 0.26
At3g16110.1 68416.m02035 thioredoxin family protein similar to p... 30 1.1
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 2.5
At5g11850.1 68418.m01385 protein kinase family protein contains ... 29 3.3
At3g15600.1 68416.m01976 hypothetical protein low similarity to ... 29 3.3
At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repe... 28 4.3
At2g07770.1 68415.m01005 hypothetical protein low similarity to ... 28 4.3
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ... 28 5.7
At5g43520.1 68418.m05321 DC1 domain-containing protein contains ... 28 5.7
At5g16100.1 68418.m01881 hypothetical protein 27 7.5
At3g27040.1 68416.m03383 meprin and TRAF homology domain-contain... 27 7.5
At5g17160.1 68418.m02010 expressed protein 27 10.0
At1g54926.1 68414.m06272 hypothetical protein 27 10.0
>At4g14540.1 68417.m02240 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 161
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +3
Query: 342 LEDENNSDSGSKS--NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
+ D +N G K NA REQDRFLPIAN+++IMK+A+P N KI+KDA+ VQ C+S
Sbjct: 1 MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 58
Score = 58.0 bits (134), Expect = 5e-09
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
KD+K C EFIS +T EASD+C+ EKRKTING+D+L+A+ T GF
Sbjct: 47 KDAKETVQECVS---EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGF 94
>At2g38880.3 68415.m04778 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = +3
Query: 369 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA+ VQ C+S
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 58
Score = 58.0 bits (134), Expect = 5e-09
Identities = 28/51 (54%), Positives = 37/51 (72%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
KD+K C EFIS +TSEASD+C+ EKRKT+NG+D+L+A+ T GF
Sbjct: 47 KDAKDTVQECVS---EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGF 94
>At2g38880.2 68415.m04777 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = +3
Query: 369 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA+ VQ C+S
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 58
Score = 58.0 bits (134), Expect = 5e-09
Identities = 28/51 (54%), Positives = 37/51 (72%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
KD+K C EFIS +TSEASD+C+ EKRKT+NG+D+L+A+ T GF
Sbjct: 47 KDAKDTVQECVS---EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGF 94
>At2g38880.1 68415.m04779 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 141
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = +3
Query: 369 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA+ VQ C+S
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 58
Score = 58.0 bits (134), Expect = 5e-09
Identities = 28/51 (54%), Positives = 37/51 (72%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
KD+K C EFIS +TSEASD+C+ EKRKT+NG+D+L+A+ T GF
Sbjct: 47 KDAKDTVQECVS---EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGF 94
>At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 67.7 bits (158), Expect = 6e-12
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +3
Query: 351 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+ VQ C+S
Sbjct: 16 ESGGDQSPRS-LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVS 67
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
KD+K C EFIS VTSEASD+C+ EKRKTING+D+L+A+ T GF
Sbjct: 56 KDAKEIVQECVS---EFISFVTSEASDKCQREKRKTINGDDLLWAMATLGF 103
>At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 67.7 bits (158), Expect = 6e-12
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +3
Query: 351 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+ VQ C+S
Sbjct: 16 ESGGDQSPRS-LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVS 67
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
KD+K C EFIS VTSEASD+C+ EKRKTING+D+L+A+ T GF
Sbjct: 56 KDAKEIVQECVS---EFISFVTSEASDKCQREKRKTINGDDLLWAMATLGF 103
>At5g47640.1 68418.m05882 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) similar
to CAAT-box DNA binding protein subunit B (NF-YB)
(SP:P25209) (GI:22380) [Zea mays]; contains Pfam PF00808
: Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; identical to cDNA transcription factor
Hap3b (Hap3b) mRNA, partial cds GI:9965734
Length = 190
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/51 (56%), Positives = 41/51 (80%)
Frame = +3
Query: 357 NSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
N+ +G S +P REQDRFLPIAN+++IMK+A+P N KI+KDA+ +Q C+S
Sbjct: 15 NNQNGQSSLSP-REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVS 64
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
KD+K C EFIS VT EASD+C+ EKRKTING+D+L+A+ T GF
Sbjct: 53 KDAKETMQECVS---EFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGF 100
>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 228
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +3
Query: 351 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+ +Q C+S
Sbjct: 15 ESGGDQSPRS-LNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVS 66
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
KD+K C EFIS VTSEASD+C+ EKRKTING+D+L+A+ T GF
Sbjct: 55 KDAKETMQECVS---EFISFVTSEASDKCQREKRKTINGDDLLWAMATLGF 102
>At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 215
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +3
Query: 360 SDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
S + +N +EQDRFLPIAN+ +IMK+ +P NGKI+KDA+ VQ C+S
Sbjct: 24 SSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 73
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +2
Query: 446 GNTXEWKDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
GN KD+K C EFIS VT EASD+C+ EKRKTING+D+++A+ T GF
Sbjct: 56 GNGKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGF 109
>At5g47670.1 68418.m05885 CCAAT-box binding transcription factor
family protein / leafy cotyledon 1-related (L1L)
supporting cDNA gi|27372446|gb|AY138461.1|; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone; contains similarity to
CCAAT-binding transcription factor subunit A (CBF-A)
(NF-Y protein chain B) (NF-YB) (CAAT-box DNA binding
protein subunit B) (Swiss-Prot:P25209) [Zea mays]
Length = 234
Score = 58.8 bits (136), Expect = 3e-09
Identities = 22/52 (42%), Positives = 37/52 (71%)
Frame = +3
Query: 354 NNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
N + +G + +REQDRF+PIAN+ +IM+R +P + KI+ D++ +Q C+S
Sbjct: 44 NKTSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVS 95
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +2
Query: 467 DSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
DSK C YI FI T EA++RC+ E+RKTI EDVL+A++ GF
Sbjct: 85 DSKETIQECVSEYISFI---TGEANERCQREQRKTITAEDVLWAMSKLGF 131
>At2g47810.1 68415.m05967 histone-like transcription factor
(CBF/NF-Y) family protein contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 160
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3
Query: 363 DSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
D + + ++EQDR LPIAN+ +IMK +P N K++K+A+ +Q C+S
Sbjct: 40 DQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVS 88
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2
Query: 509 EFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
EFIS VT EASD+C EKRKT+NG+D+ +A+ GF
Sbjct: 89 EFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGF 124
>At1g21970.1 68414.m02749 CCAAT-box binding transcription factor
(LEC1) similar to CAAT-box DNA binding protein subunit B
(NF-YB) (SP:P25209) (GI:22380) [Zea mays]; identical to
GB:AAC39488 GI:3282674 from [Arabidopsis thaliana] (Cell
93 (7), 1195-1205 (1998)); identified in Plant Cell 2003
Jan;15(1):5-18; contains Pfam PF00808 : Histone-like
transcription factor (CBF/NF-Y) and archaeal histone
Length = 238
Score = 50.8 bits (116), Expect = 7e-07
Identities = 18/39 (46%), Positives = 31/39 (79%)
Frame = +3
Query: 393 REQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXCIS 509
REQD+++PIAN+ +IM++ +P + KI+ DA+ +Q C+S
Sbjct: 58 REQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVS 96
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +2
Query: 509 EFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
E+IS VT EA++RC+ E+RKTI ED+L+A++ GF
Sbjct: 97 EYISFVTGEANERCQREQRKTITAEDILWAMSKLGF 132
>At1g09030.1 68414.m01007 histone-like transcription factor
(CBF/NF-Y) family protein contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to CAAT-box DNA binding
protein subunit B (NF-YB) (GI:22380) [Zea mays]
Length = 139
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = +2
Query: 464 KDSKRCXGMCSGMYIEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXG 613
K++K+ C+ EFIS VT EAS++C E RKT+NG+D+ +AL+T G
Sbjct: 29 KEAKQTVQECA---TEFISFVTCEASEKCHRENRKTVNGDDIWWALSTLG 75
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +3
Query: 390 LREQDRFLPIANIAKIMKRAIPENGKIAKDARGCVQXC 503
+ ++DR LPIAN+ ++MK+ +P N KI+K+A+ VQ C
Sbjct: 1 MTDEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQEC 38
>At5g23090.3 68418.m02701 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 146
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 506 IEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
+EFI+ V+SE++D C E ++TI E VL AL GF
Sbjct: 35 VEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGF 71
>At5g23090.2 68418.m02700 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 159
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 506 IEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
+EFI+ V+SE++D C E ++TI E VL AL GF
Sbjct: 48 VEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGF 84
>At5g23090.1 68418.m02699 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 159
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 506 IEFISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
+EFI+ V+SE++D C E ++TI E VL AL GF
Sbjct: 48 VEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGF 84
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 231 DTKISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLRE 398
DT I + D + N + D+G V DDT + D + +D N D GS + L +
Sbjct: 474 DTAIDSMADDTVSNSMAESDDGDNVEDDTAI---DSMCDDTANDDVGSDDSGSLAD 526
>At1g42990.1 68414.m04949 bZIP transcription factor family protein
contains Pfam profile: PF00170: bZIP transcription
factor
Length = 295
Score = 32.3 bits (70), Expect = 0.26
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 222 LKVDTKISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSK 377
L VD S+ GS +L D V + ADD+ NSD V+E ++N DSGS+
Sbjct: 76 LLVDYPTSDSGSVDLAADKVLTVDSPAAADDSGKENSDLVVEKKSN-DSGSE 126
>At3g16110.1 68416.m02035 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 534
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/88 (27%), Positives = 44/88 (50%)
Frame = +3
Query: 165 YVTLSSKSSTHFFNKRELLLKVDTKISNHGSDELGNDLVRLDNGFLVADDTFVVNSDDVL 344
+V +S+S T F+ E+++ V K G+ + D V +GFL TF++ +
Sbjct: 156 FVNGTSQSYTGGFSSEEIVIWVQKKT---GASTIKLDTVDEASGFLKKHHTFILGLFEKS 212
Query: 345 EDENNSDSGSKSNAPLREQDRFLPIANI 428
ED + D K+ A L + +F+ ++I
Sbjct: 213 EDSSGHDEFVKA-ASLDNEIQFVETSSI 239
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 512 FISXVTSEASDRCKVEKRKTINGEDVLFALNTXGF 616
FI +++ A+D CK +R+T+ +DV AL F
Sbjct: 50 FIHYLSATANDFCKDARRQTMKADDVFKALEEMDF 84
>At5g11850.1 68418.m01385 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K delta-1 protein kinase GI:2253009
Length = 880
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 494 SGMYIEFISXVTSEASDRCKVEKRKT 571
SGM F + E SDRC VEK +T
Sbjct: 396 SGMVANFFTGNQEENSDRCAVEKHQT 421
>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 591
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/76 (19%), Positives = 37/76 (48%)
Frame = +3
Query: 258 DELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKI 437
DE+ V +G + + V DD ++ E + S + E ++ + +A+ K
Sbjct: 464 DEMDGGKVAESDGEMDGEKDKEVPEDDEMDGEKEKEVAEPSEIGMPESEKDIEVADSEK- 522
Query: 438 MKRAIPENGKIAKDAR 485
++ +P++ K+A+ ++
Sbjct: 523 -EKEVPQDAKVAEPSK 537
>At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repeat
(PF00400); 42% similarity to fimbriae-associated protein
Fap1 (gi:3929312) [Streptococcus parasanguinis]
Length = 994
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 213 ELLLKVDTKISN-HGSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKS 380
ELLL+V + + H D V + G + ADD + +LEDE+N SG S
Sbjct: 148 ELLLQVSNQEEDDHEVLSSNGDSVGVAAGSVSADDFRSFGGESLLEDEDNGVSGVAS 204
>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 518
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/76 (19%), Positives = 37/76 (48%)
Frame = +3
Query: 258 DELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKI 437
DE+ V +G + + V DD ++ E + S + E ++ + +A+ K
Sbjct: 391 DEMDGGKVAESDGEMDGEKDKEVPQDDEMDGEKEKEVAEPSEIGVPESEKDIEVADSEK- 449
Query: 438 MKRAIPENGKIAKDAR 485
++ +P++ K+A+ ++
Sbjct: 450 -EKEVPQDAKVAEPSK 464
>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 27.9 bits (59), Expect = 5.7
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +3
Query: 129 LPSSLNTQ-FCKHYVTLSSKSSTHFFNKRELLLKVDTKISNHGSDELGNDLVRLDNGFLV 305
+P+++NT+ FC + +S+ K +LK S+ GSD++ +D V D V
Sbjct: 608 VPNNINTRPFC---IQCNSRCKVSVILK---ILKDSEDGSDDGSDDVSDD-VSDDPSNDV 660
Query: 306 ADDTFVVNSD---DVL-EDENNSDSGSKSN 383
+DDT +SD DV+ +D +N DS S+
Sbjct: 661 SDDTSDDDSDVVSDVVSDDASNDDSDDTSD 690
>At5g43520.1 68418.m05321 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 250
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 381 CSYSQSPSCFHLLTHHQN*QQMCHPLPKIHCP 286
C Y SCF L + N HPL +H P
Sbjct: 57 CDYFLHKSCFDLPSETNNKSHQDHPLTLLHSP 88
>At5g16100.1 68418.m01881 hypothetical protein
Length = 356
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/84 (22%), Positives = 38/84 (45%)
Frame = +3
Query: 132 PSSLNTQFCKHYVTLSSKSSTHFFNKRELLLKVDTKISNHGSDELGNDLVRLDNGFLVAD 311
P+ ++ F +H + ++ L ++D ISN+ S + L +++GF +
Sbjct: 45 PNLMDMSFTEHTPPSVLPTLPSDVDETHLFHELDLSISNYDSKDEFETLSFVEDGFTIPL 104
Query: 312 DTFVVNSDDVLEDENNSDSGSKSN 383
D F +D+ ++NN G N
Sbjct: 105 DMFEQPNDE--HNDNNDVPGEIGN 126
>At3g27040.1 68416.m03383 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 358
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 207 KRELLLKVDTKISNHGSDE--LGNDLVRLDNGFLVADDTFVVNSDDVLE 347
+RE + D K + HG + L +++ D GFLV + +V DVLE
Sbjct: 176 QREAVYWFDEKDTTHGFESMFLLSEIQSSDKGFLVNGEVKIVAEVDVLE 224
>At5g17160.1 68418.m02010 expressed protein
Length = 569
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -2
Query: 244 EILVSTFSS--SSRLLKKCVLDLELSVT*CLQNCVFKDE 134
E++ S +S+ S+RLL+KC+ DL L + N K+E
Sbjct: 151 ELVQSVYSTRRSTRLLEKCMADLSLKTKETVDNKPAKNE 189
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 378 SYSQSPSCFHLLTHHQN*QQMCHP 307
S S+SPSC +LL+H + Q+ P
Sbjct: 209 STSRSPSCIYLLSHGETDQRSVRP 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,745,037
Number of Sequences: 28952
Number of extensions: 225029
Number of successful extensions: 656
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -